Hb_006807_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6807: 20959-25706
Sequence    

Annotation

kegg
ID rcu:RCOM_0455430
description Disease resistance protein RPH8A, putative (EC:3.1.3.16)
nr
ID XP_002529491.1
description Disease resistance protein RPH8A, putative [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9SU22
description Disease resistance protein RPH8A, putative OS=Ricinus communis GN=RCOM_0455430 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance rpp13-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53775: 21811-22052 , PASA_asmbl_53776: 24399-24562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006807_050 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
2 Hb_004586_210 0.2210596414 - - transcription factor, putative [Ricinus communis]
3 Hb_155599_010 0.2283437172 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000164_020 0.2355039458 - - actin binding protein, putative [Ricinus communis]
5 Hb_000210_230 0.2381139889 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
6 Hb_010174_080 0.2438656453 - - -
7 Hb_000708_040 0.244640421 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003411_110 0.2451798102 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
9 Hb_027393_030 0.2484862602 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
10 Hb_001246_110 0.2501558205 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
11 Hb_002284_280 0.2501601848 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
12 Hb_006502_060 0.2516052991 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000479_150 0.2527959431 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
14 Hb_012762_030 0.2528170947 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
15 Hb_055488_010 0.2536015114 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
16 Hb_001060_110 0.2550767693 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_000009_080 0.2558924423 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
18 Hb_001051_040 0.2561658683 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
19 Hb_001544_030 0.2562774088 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
20 Hb_002217_240 0.2563663927 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]

Gene co-expression network

sample Hb_006807_050 Hb_006807_050 Hb_004586_210 Hb_004586_210 Hb_006807_050--Hb_004586_210 Hb_155599_010 Hb_155599_010 Hb_006807_050--Hb_155599_010 Hb_000164_020 Hb_000164_020 Hb_006807_050--Hb_000164_020 Hb_000210_230 Hb_000210_230 Hb_006807_050--Hb_000210_230 Hb_010174_080 Hb_010174_080 Hb_006807_050--Hb_010174_080 Hb_000708_040 Hb_000708_040 Hb_006807_050--Hb_000708_040 Hb_002110_020 Hb_002110_020 Hb_004586_210--Hb_002110_020 Hb_031862_130 Hb_031862_130 Hb_004586_210--Hb_031862_130 Hb_027393_030 Hb_027393_030 Hb_004586_210--Hb_027393_030 Hb_000116_010 Hb_000116_010 Hb_004586_210--Hb_000116_010 Hb_000007_180 Hb_000007_180 Hb_004586_210--Hb_000007_180 Hb_004204_170 Hb_004204_170 Hb_004586_210--Hb_004204_170 Hb_001766_020 Hb_001766_020 Hb_155599_010--Hb_001766_020 Hb_009393_180 Hb_009393_180 Hb_155599_010--Hb_009393_180 Hb_000019_050 Hb_000019_050 Hb_155599_010--Hb_000019_050 Hb_003411_110 Hb_003411_110 Hb_155599_010--Hb_003411_110 Hb_000832_030 Hb_000832_030 Hb_155599_010--Hb_000832_030 Hb_000084_030 Hb_000084_030 Hb_155599_010--Hb_000084_030 Hb_001246_110 Hb_001246_110 Hb_000164_020--Hb_001246_110 Hb_000342_060 Hb_000342_060 Hb_000164_020--Hb_000342_060 Hb_000869_080 Hb_000869_080 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_001766_060 Hb_001766_060 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_001195_600 Hb_001195_600 Hb_000210_230--Hb_001195_600 Hb_002813_040 Hb_002813_040 Hb_000210_230--Hb_002813_040 Hb_000210_230--Hb_001246_110 Hb_000210_230--Hb_000164_020 Hb_003581_070 Hb_003581_070 Hb_000210_230--Hb_003581_070 Hb_001856_230 Hb_001856_230 Hb_000210_230--Hb_001856_230 Hb_002102_020 Hb_002102_020 Hb_010174_080--Hb_002102_020 Hb_000326_040 Hb_000326_040 Hb_010174_080--Hb_000326_040 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_010174_080--Hb_004586_210 Hb_000856_190 Hb_000856_190 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_000032_440 Hb_000032_440 Hb_000708_040--Hb_000032_440 Hb_002284_310 Hb_002284_310 Hb_000708_040--Hb_002284_310 Hb_000317_490 Hb_000317_490 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.44942 3.80738 2.42767 2.78609 0.0287419 2.5113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1829 2.57904 4.83226 0.169973 1.88556

CAGE analysis