Hb_000210_230

Information

Type -
Description -
Location Contig210: 262183-262875
Sequence    

Annotation

kegg
ID rcu:RCOM_0437750
description hypothetical protein
nr
ID XP_012074330.1
description PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08767 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_230 0.0 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
2 Hb_001195_600 0.0978699045 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
3 Hb_002813_040 0.0999339007 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
4 Hb_001246_110 0.1067344858 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
5 Hb_000164_020 0.1097296634 - - actin binding protein, putative [Ricinus communis]
6 Hb_003581_070 0.1109048495 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
7 Hb_001856_230 0.1166107674 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_002217_240 0.1180886674 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
9 Hb_007532_030 0.1181407423 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_001488_070 0.1187962945 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000342_060 0.1192354044 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
12 Hb_000009_080 0.1193945593 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
13 Hb_055488_010 0.1203620425 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
14 Hb_000127_130 0.1210707524 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
15 Hb_001766_060 0.1240027315 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005551_050 0.125883222 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
17 Hb_008226_060 0.1262078375 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
18 Hb_006816_350 0.1262315691 - - PREDICTED: syntaxin-43 [Jatropha curcas]
19 Hb_001377_260 0.1263676709 - - protein with unknown function [Ricinus communis]
20 Hb_000181_070 0.1268249389 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000210_230 Hb_000210_230 Hb_001195_600 Hb_001195_600 Hb_000210_230--Hb_001195_600 Hb_002813_040 Hb_002813_040 Hb_000210_230--Hb_002813_040 Hb_001246_110 Hb_001246_110 Hb_000210_230--Hb_001246_110 Hb_000164_020 Hb_000164_020 Hb_000210_230--Hb_000164_020 Hb_003581_070 Hb_003581_070 Hb_000210_230--Hb_003581_070 Hb_001856_230 Hb_001856_230 Hb_000210_230--Hb_001856_230 Hb_055488_010 Hb_055488_010 Hb_001195_600--Hb_055488_010 Hb_029866_090 Hb_029866_090 Hb_001195_600--Hb_029866_090 Hb_008725_260 Hb_008725_260 Hb_001195_600--Hb_008725_260 Hb_000056_210 Hb_000056_210 Hb_001195_600--Hb_000056_210 Hb_000915_090 Hb_000915_090 Hb_001195_600--Hb_000915_090 Hb_001195_600--Hb_002813_040 Hb_001488_070 Hb_001488_070 Hb_002813_040--Hb_001488_070 Hb_002813_040--Hb_003581_070 Hb_002813_040--Hb_029866_090 Hb_031527_040 Hb_031527_040 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_001246_110--Hb_000164_020 Hb_001766_060 Hb_001766_060 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_000869_080 Hb_000869_080 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_000342_060 Hb_000342_060 Hb_001246_110--Hb_000342_060 Hb_000164_020--Hb_000342_060 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_004228_030 Hb_004228_030 Hb_003581_070--Hb_004228_030 Hb_003581_070--Hb_002256_030 Hb_000125_170 Hb_000125_170 Hb_003581_070--Hb_000125_170 Hb_003371_150 Hb_003371_150 Hb_003581_070--Hb_003371_150 Hb_012564_030 Hb_012564_030 Hb_001856_230--Hb_012564_030 Hb_048219_010 Hb_048219_010 Hb_001856_230--Hb_048219_010 Hb_003544_110 Hb_003544_110 Hb_001856_230--Hb_003544_110 Hb_007532_030 Hb_007532_030 Hb_001856_230--Hb_007532_030 Hb_000331_670 Hb_000331_670 Hb_001856_230--Hb_000331_670 Hb_002374_310 Hb_002374_310 Hb_001856_230--Hb_002374_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8934 18.0504 6.2229 15.8372 6.34181 11.5802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9325 19.9948 18.0481 4.27952 6.37026

CAGE analysis