Hb_006237_020

Information

Type -
Description -
Location Contig6237: 51935-56597
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006237_020 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_001012_020 0.3619824715 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
3 Hb_003952_140 0.3680283342 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
4 Hb_179447_010 0.3744174951 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
5 Hb_007904_140 0.3847358986 - - -
6 Hb_002007_010 0.3999857493 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
7 Hb_002289_020 0.4060202004 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_013483_010 0.4073739989 - - -
9 Hb_000803_130 0.4082068193 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000252_030 0.4105841021 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_022132_040 0.4113714541 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
12 Hb_001021_060 0.4209395015 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_157568_010 0.4240600342 - - MATE efflux family protein, putative [Theobroma cacao]
14 Hb_001195_540 0.4253317463 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
15 Hb_124480_010 0.4274361365 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_025236_030 0.4279856737 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
17 Hb_173866_010 0.4322744562 - - -
18 Hb_001087_020 0.4332388396 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
19 Hb_027913_020 0.4346629375 - - -
20 Hb_000445_080 0.4387565639 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006237_020 Hb_006237_020 Hb_001012_020 Hb_001012_020 Hb_006237_020--Hb_001012_020 Hb_003952_140 Hb_003952_140 Hb_006237_020--Hb_003952_140 Hb_179447_010 Hb_179447_010 Hb_006237_020--Hb_179447_010 Hb_007904_140 Hb_007904_140 Hb_006237_020--Hb_007904_140 Hb_002007_010 Hb_002007_010 Hb_006237_020--Hb_002007_010 Hb_002289_020 Hb_002289_020 Hb_006237_020--Hb_002289_020 Hb_005935_010 Hb_005935_010 Hb_001012_020--Hb_005935_010 Hb_157568_010 Hb_157568_010 Hb_001012_020--Hb_157568_010 Hb_001221_510 Hb_001221_510 Hb_001012_020--Hb_001221_510 Hb_135403_010 Hb_135403_010 Hb_001012_020--Hb_135403_010 Hb_123202_010 Hb_123202_010 Hb_001012_020--Hb_123202_010 Hb_002671_080 Hb_002671_080 Hb_001012_020--Hb_002671_080 Hb_000252_030 Hb_000252_030 Hb_003952_140--Hb_000252_030 Hb_179112_010 Hb_179112_010 Hb_003952_140--Hb_179112_010 Hb_001021_060 Hb_001021_060 Hb_003952_140--Hb_001021_060 Hb_123521_010 Hb_123521_010 Hb_003952_140--Hb_123521_010 Hb_108886_010 Hb_108886_010 Hb_003952_140--Hb_108886_010 Hb_183612_030 Hb_183612_030 Hb_003952_140--Hb_183612_030 Hb_001014_200 Hb_001014_200 Hb_179447_010--Hb_001014_200 Hb_033883_050 Hb_033883_050 Hb_179447_010--Hb_033883_050 Hb_000875_100 Hb_000875_100 Hb_179447_010--Hb_000875_100 Hb_011537_120 Hb_011537_120 Hb_179447_010--Hb_011537_120 Hb_174005_010 Hb_174005_010 Hb_179447_010--Hb_174005_010 Hb_032531_050 Hb_032531_050 Hb_179447_010--Hb_032531_050 Hb_008768_030 Hb_008768_030 Hb_007904_140--Hb_008768_030 Hb_110559_010 Hb_110559_010 Hb_007904_140--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_007904_140--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_007904_140--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_007904_140--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_007904_140--Hb_144451_010 Hb_000649_100 Hb_000649_100 Hb_002007_010--Hb_000649_100 Hb_032264_090 Hb_032264_090 Hb_002007_010--Hb_032264_090 Hb_001103_020 Hb_001103_020 Hb_002007_010--Hb_001103_020 Hb_000210_090 Hb_000210_090 Hb_002007_010--Hb_000210_090 Hb_140902_010 Hb_140902_010 Hb_002007_010--Hb_140902_010 Hb_001449_050 Hb_001449_050 Hb_002007_010--Hb_001449_050 Hb_124480_010 Hb_124480_010 Hb_002289_020--Hb_124480_010 Hb_002534_110 Hb_002534_110 Hb_002289_020--Hb_002534_110 Hb_000889_090 Hb_000889_090 Hb_002289_020--Hb_000889_090 Hb_048110_010 Hb_048110_010 Hb_002289_020--Hb_048110_010 Hb_002289_020--Hb_000875_100 Hb_002289_020--Hb_001014_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00746616 0 0 0 0.0198188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0102882 0 0.0155594 0 0

CAGE analysis