Hb_002671_080

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig2671: 125998-143509
Sequence    

Annotation

kegg
ID tcc:TCM_024732
description Nuclear factor Y, putative
nr
ID XP_012086116.1
description PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
swissprot
ID Q945M9
description Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1
trembl
ID A0A067K2I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21057 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27830: 125984-143652 , PASA_asmbl_27831: 140433-140749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_080 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
2 Hb_102156_010 0.1511519042 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023226_010 0.1674760661 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
4 Hb_001057_050 0.170534862 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
5 Hb_000608_180 0.1717532121 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
6 Hb_002259_150 0.1728655597 - - BnaC04g40780D [Brassica napus]
7 Hb_015057_010 0.1731852521 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
8 Hb_001976_050 0.1745074608 - - PREDICTED: protein SKIP34 [Jatropha curcas]
9 Hb_000175_400 0.1761922427 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_540 0.179597079 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
11 Hb_004117_180 0.1796501338 - - -
12 Hb_002259_030 0.1802098384 - - conserved hypothetical protein [Ricinus communis]
13 Hb_120221_010 0.1802808437 - - -
14 Hb_000157_120 0.1812113903 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_106005_010 0.182627818 - - EG5651 [Manihot esculenta]
16 Hb_001310_070 0.1837348076 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_007317_060 0.1842753552 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
18 Hb_004453_150 0.1863984202 - - BnaC02g13240D [Brassica napus]
19 Hb_004143_110 0.1864783484 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
20 Hb_000453_260 0.186916307 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_002671_080 Hb_002671_080 Hb_102156_010 Hb_102156_010 Hb_002671_080--Hb_102156_010 Hb_023226_010 Hb_023226_010 Hb_002671_080--Hb_023226_010 Hb_001057_050 Hb_001057_050 Hb_002671_080--Hb_001057_050 Hb_000608_180 Hb_000608_180 Hb_002671_080--Hb_000608_180 Hb_002259_150 Hb_002259_150 Hb_002671_080--Hb_002259_150 Hb_015057_010 Hb_015057_010 Hb_002671_080--Hb_015057_010 Hb_102156_010--Hb_002259_150 Hb_000175_400 Hb_000175_400 Hb_102156_010--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_002272_260 Hb_002272_260 Hb_102156_010--Hb_002272_260 Hb_004453_150 Hb_004453_150 Hb_102156_010--Hb_004453_150 Hb_000144_090 Hb_000144_090 Hb_023226_010--Hb_000144_090 Hb_001133_020 Hb_001133_020 Hb_023226_010--Hb_001133_020 Hb_011161_040 Hb_011161_040 Hb_023226_010--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_023226_010--Hb_008173_120 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_001057_050--Hb_000193_350 Hb_001057_050--Hb_102156_010 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_001057_050--Hb_002259_150 Hb_006252_010 Hb_006252_010 Hb_000608_180--Hb_006252_010 Hb_002197_030 Hb_002197_030 Hb_000608_180--Hb_002197_030 Hb_006487_060 Hb_006487_060 Hb_000608_180--Hb_006487_060 Hb_137403_010 Hb_137403_010 Hb_000608_180--Hb_137403_010 Hb_005965_010 Hb_005965_010 Hb_000608_180--Hb_005965_010 Hb_002023_020 Hb_002023_020 Hb_000608_180--Hb_002023_020 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002259_150--Hb_002272_260 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_000380_010 Hb_000380_010 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.6789 5.45492 1.55562 6.25502 2.06546 38.6779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7537 15.9843 13.3016 3.84337 0.385104

CAGE analysis