Hb_157568_010

Information

Type -
Description -
Location Contig157568: 243-563
Sequence    

Annotation

kegg
ID tcc:TCM_012225
description MATE efflux family protein, putative
nr
ID XP_007036385.1
description MATE efflux family protein, putative [Theobroma cacao]
swissprot
ID Q9LUH3
description MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1
trembl
ID A0A061FUF8
description MATE efflux family protein OS=Theobroma cacao GN=TCM_012225 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157568_010 0.0 - - MATE efflux family protein, putative [Theobroma cacao]
2 Hb_111648_010 0.2176902788 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
3 Hb_001514_180 0.218660204 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
4 Hb_001012_020 0.2229610207 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
5 Hb_000442_030 0.2336311218 - - conserved hypothetical protein [Ricinus communis]
6 Hb_024505_040 0.2342781447 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
7 Hb_001221_510 0.2380086265 - - Protein HVA22, putative [Ricinus communis]
8 Hb_145226_010 0.2385505904 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
9 Hb_000206_220 0.2395786572 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
10 Hb_134789_010 0.24018125 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
11 Hb_165739_010 0.2413506124 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000849_040 0.2415820022 - - transcription factor, putative [Ricinus communis]
13 Hb_005779_100 0.2428360511 - - DNAJ [Theobroma cacao]
14 Hb_004072_010 0.2444502212 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
15 Hb_000491_090 0.2445922663 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
16 Hb_000130_370 0.2454014675 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
17 Hb_005935_010 0.2462905273 - - -
18 Hb_006831_010 0.2464582322 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_006602_010 0.2465401363 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
20 Hb_123202_010 0.2482736856 - - thioredoxin h [Hevea brasiliensis]

Gene co-expression network

sample Hb_157568_010 Hb_157568_010 Hb_111648_010 Hb_111648_010 Hb_157568_010--Hb_111648_010 Hb_001514_180 Hb_001514_180 Hb_157568_010--Hb_001514_180 Hb_001012_020 Hb_001012_020 Hb_157568_010--Hb_001012_020 Hb_000442_030 Hb_000442_030 Hb_157568_010--Hb_000442_030 Hb_024505_040 Hb_024505_040 Hb_157568_010--Hb_024505_040 Hb_001221_510 Hb_001221_510 Hb_157568_010--Hb_001221_510 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_000078_010 Hb_000078_010 Hb_111648_010--Hb_000078_010 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_000041_070 Hb_001741_080 Hb_001741_080 Hb_001514_180--Hb_001741_080 Hb_060668_010 Hb_060668_010 Hb_001514_180--Hb_060668_010 Hb_001514_180--Hb_000444_030 Hb_005935_010 Hb_005935_010 Hb_001012_020--Hb_005935_010 Hb_001012_020--Hb_001221_510 Hb_135403_010 Hb_135403_010 Hb_001012_020--Hb_135403_010 Hb_123202_010 Hb_123202_010 Hb_001012_020--Hb_123202_010 Hb_002671_080 Hb_002671_080 Hb_001012_020--Hb_002671_080 Hb_000849_040 Hb_000849_040 Hb_000442_030--Hb_000849_040 Hb_006787_040 Hb_006787_040 Hb_000442_030--Hb_006787_040 Hb_000442_030--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_024505_040--Hb_000849_040 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_024505_040--Hb_000041_070 Hb_001221_510--Hb_116264_010 Hb_000491_090 Hb_000491_090 Hb_001221_510--Hb_000491_090 Hb_001221_510--Hb_111648_010 Hb_001396_220 Hb_001396_220 Hb_001221_510--Hb_001396_220 Hb_004448_020 Hb_004448_020 Hb_001221_510--Hb_004448_020 Hb_000048_050 Hb_000048_050 Hb_001221_510--Hb_000048_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51065 0.811875 0 0 12.6808 44.3924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.9765 7.99279 31.9554 2.96866 0.400206

CAGE analysis