Hb_005271_110

Information

Type -
Description -
Location Contig5271: 73661-79242
Sequence    

Annotation

kegg
ID rcu:RCOM_1686300
description ATP binding protein, putative
nr
ID XP_012086945.1
description PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47055: 73736-79241
cDNA
(Sanger)
(ID:Location)		 030_I24.ab1: 73765-73865 , 045_L16.ab1: 78075-79241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_110 0.0 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
2 Hb_007811_030 0.130495618 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000200_030 0.1359163599 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
4 Hb_000984_270 0.1397647725 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000915_260 0.1401120702 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
6 Hb_001981_040 0.1417176366 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
7 Hb_004994_380 0.1430788304 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
8 Hb_000700_150 0.1459589346 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000076_130 0.1466751598 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
10 Hb_001604_120 0.1486136515 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
11 Hb_000637_150 0.1498456362 - - Protein CASP, putative [Ricinus communis]
12 Hb_000135_030 0.1501204372 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
13 Hb_000139_370 0.1513888564 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
14 Hb_000074_080 0.1528517591 - - unknown [Populus trichocarpa]
15 Hb_000027_190 0.152976959 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
16 Hb_172632_040 0.1534021794 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
17 Hb_011486_040 0.1534629077 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
18 Hb_000613_010 0.1542312554 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
19 Hb_001205_250 0.1575506586 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
20 Hb_000922_410 0.1588296678 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005271_110 Hb_005271_110 Hb_007811_030 Hb_007811_030 Hb_005271_110--Hb_007811_030 Hb_000200_030 Hb_000200_030 Hb_005271_110--Hb_000200_030 Hb_000984_270 Hb_000984_270 Hb_005271_110--Hb_000984_270 Hb_000915_260 Hb_000915_260 Hb_005271_110--Hb_000915_260 Hb_001981_040 Hb_001981_040 Hb_005271_110--Hb_001981_040 Hb_004994_380 Hb_004994_380 Hb_005271_110--Hb_004994_380 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_000173_290 Hb_000173_290 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_002374_240 Hb_002374_240 Hb_000200_030--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000200_030--Hb_000224_160 Hb_000184_170 Hb_000184_170 Hb_000200_030--Hb_000184_170 Hb_000200_030--Hb_004994_380 Hb_000200_030--Hb_000915_260 Hb_022693_140 Hb_022693_140 Hb_000200_030--Hb_022693_140 Hb_001604_120 Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_006846_070 Hb_006846_070 Hb_000984_270--Hb_006846_070 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_005672_020 Hb_005672_020 Hb_000984_270--Hb_005672_020 Hb_000135_030 Hb_000135_030 Hb_000984_270--Hb_000135_030 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_000205_140 Hb_000205_140 Hb_001981_040--Hb_000205_140 Hb_079526_040 Hb_079526_040 Hb_001981_040--Hb_079526_040 Hb_000637_150 Hb_000637_150 Hb_001981_040--Hb_000637_150 Hb_031091_020 Hb_031091_020 Hb_001981_040--Hb_031091_020 Hb_001518_080 Hb_001518_080 Hb_001981_040--Hb_001518_080 Hb_000207_300 Hb_000207_300 Hb_001981_040--Hb_000207_300 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9711 0.923473 11.1896 11.649 14.588 14.8473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17653 6.77985 9.9377 12.4236 20.5015

CAGE analysis