Hb_003927_050

Information

Type -
Description -
Location Contig3927: 36896-39418
Sequence    

Annotation

kegg
ID tcc:TCM_041932
description hypothetical protein
nr
ID XP_012065931.1
description PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05634 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39338: 37231-37502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_050 0.0 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
2 Hb_000959_350 0.2109688796 - - PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
3 Hb_000122_070 0.2125021952 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
4 Hb_002686_190 0.2147904876 - - -
5 Hb_001051_040 0.2161254516 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
6 Hb_000228_060 0.2198217629 - - hypothetical protein JCGZ_21532 [Jatropha curcas]
7 Hb_000029_080 0.2199405427 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
8 Hb_012506_060 0.2202391483 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
9 Hb_000505_130 0.2221031515 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
10 Hb_000802_140 0.2237374438 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
11 Hb_004218_010 0.2243338811 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_044653_040 0.2245111733 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
13 Hb_000309_130 0.2277117845 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
14 Hb_004157_020 0.2287850647 - - PREDICTED: histone H2B-like [Gossypium raimondii]
15 Hb_001769_170 0.2293113997 - - 50S ribosomal protein L31, putative [Ricinus communis]
16 Hb_023278_020 0.2317478812 - - Peroxin 3 isoform 1 [Theobroma cacao]
17 Hb_000733_180 0.2320106229 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
18 Hb_005843_140 0.2328707415 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000161_130 0.2332807624 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
20 Hb_000161_070 0.2344462665 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003927_050 Hb_003927_050 Hb_000959_350 Hb_000959_350 Hb_003927_050--Hb_000959_350 Hb_000122_070 Hb_000122_070 Hb_003927_050--Hb_000122_070 Hb_002686_190 Hb_002686_190 Hb_003927_050--Hb_002686_190 Hb_001051_040 Hb_001051_040 Hb_003927_050--Hb_001051_040 Hb_000228_060 Hb_000228_060 Hb_003927_050--Hb_000228_060 Hb_000029_080 Hb_000029_080 Hb_003927_050--Hb_000029_080 Hb_005551_040 Hb_005551_040 Hb_000959_350--Hb_005551_040 Hb_002540_080 Hb_002540_080 Hb_000959_350--Hb_002540_080 Hb_002871_190 Hb_002871_190 Hb_000959_350--Hb_002871_190 Hb_034380_020 Hb_034380_020 Hb_000959_350--Hb_034380_020 Hb_002014_030 Hb_002014_030 Hb_000959_350--Hb_002014_030 Hb_011689_120 Hb_011689_120 Hb_000959_350--Hb_011689_120 Hb_000802_140 Hb_000802_140 Hb_000122_070--Hb_000802_140 Hb_012506_060 Hb_012506_060 Hb_000122_070--Hb_012506_060 Hb_006469_080 Hb_006469_080 Hb_000122_070--Hb_006469_080 Hb_002157_120 Hb_002157_120 Hb_000122_070--Hb_002157_120 Hb_000345_310 Hb_000345_310 Hb_000122_070--Hb_000345_310 Hb_004531_140 Hb_004531_140 Hb_000122_070--Hb_004531_140 Hb_003207_180 Hb_003207_180 Hb_002686_190--Hb_003207_180 Hb_007101_300 Hb_007101_300 Hb_002686_190--Hb_007101_300 Hb_005489_060 Hb_005489_060 Hb_002686_190--Hb_005489_060 Hb_007878_010 Hb_007878_010 Hb_002686_190--Hb_007878_010 Hb_006588_170 Hb_006588_170 Hb_002686_190--Hb_006588_170 Hb_000032_380 Hb_000032_380 Hb_002686_190--Hb_000032_380 Hb_001396_110 Hb_001396_110 Hb_001051_040--Hb_001396_110 Hb_006117_060 Hb_006117_060 Hb_001051_040--Hb_006117_060 Hb_001936_010 Hb_001936_010 Hb_001051_040--Hb_001936_010 Hb_001189_040 Hb_001189_040 Hb_001051_040--Hb_001189_040 Hb_002298_030 Hb_002298_030 Hb_001051_040--Hb_002298_030 Hb_007926_050 Hb_007926_050 Hb_001051_040--Hb_007926_050 Hb_093666_010 Hb_093666_010 Hb_000228_060--Hb_093666_010 Hb_007821_030 Hb_007821_030 Hb_000228_060--Hb_007821_030 Hb_000907_180 Hb_000907_180 Hb_000228_060--Hb_000907_180 Hb_001541_050 Hb_001541_050 Hb_000228_060--Hb_001541_050 Hb_000237_200 Hb_000237_200 Hb_000228_060--Hb_000237_200 Hb_000228_060--Hb_012506_060 Hb_000568_060 Hb_000568_060 Hb_000029_080--Hb_000568_060 Hb_005211_180 Hb_005211_180 Hb_000029_080--Hb_005211_180 Hb_177215_040 Hb_177215_040 Hb_000029_080--Hb_177215_040 Hb_000045_300 Hb_000045_300 Hb_000029_080--Hb_000045_300 Hb_000164_100 Hb_000164_100 Hb_000029_080--Hb_000164_100 Hb_000029_080--Hb_002686_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0580613 0.138016 0.237853 0.130136 0 0.283782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118295 0.325595 0.169728 0.056299 0.188494

CAGE analysis