Hb_001051_040

Information

Type -
Description -
Location Contig1051: 76961-81359
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01610g
description POPTRDRAFT_204391; hypothetical protein
nr
ID XP_012064797.1
description PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05502 PE=4 SV=1
Gene Ontology
ID GO:0016757
description glycosyltransferase family protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01723: 81102-81432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_040 0.0 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
2 Hb_001396_110 0.1329174096 - - DNA primase large subunit, putative [Ricinus communis]
3 Hb_006117_060 0.1475865833 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
4 Hb_001936_010 0.1517667015 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
5 Hb_001189_040 0.1542871372 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
6 Hb_002298_030 0.154467111 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
7 Hb_007926_050 0.1619029001 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
8 Hb_013394_050 0.1648332009 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
9 Hb_008226_060 0.1659841238 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
10 Hb_001377_260 0.1670153298 - - protein with unknown function [Ricinus communis]
11 Hb_000086_140 0.1671639462 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
12 Hb_000125_100 0.1672018336 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
13 Hb_038574_010 0.1681779515 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
14 Hb_002863_030 0.168977539 - - unknown [Populus trichocarpa x Populus deltoides]
15 Hb_001766_080 0.1692243209 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
16 Hb_007101_300 0.1697871567 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
17 Hb_005867_090 0.1703553487 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
18 Hb_187679_010 0.1707510052 - - -
19 Hb_005914_110 0.1714453521 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_000733_200 0.1724060441 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001051_040 Hb_001051_040 Hb_001396_110 Hb_001396_110 Hb_001051_040--Hb_001396_110 Hb_006117_060 Hb_006117_060 Hb_001051_040--Hb_006117_060 Hb_001936_010 Hb_001936_010 Hb_001051_040--Hb_001936_010 Hb_001189_040 Hb_001189_040 Hb_001051_040--Hb_001189_040 Hb_002298_030 Hb_002298_030 Hb_001051_040--Hb_002298_030 Hb_007926_050 Hb_007926_050 Hb_001051_040--Hb_007926_050 Hb_006643_020 Hb_006643_020 Hb_001396_110--Hb_006643_020 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_004450_050 Hb_004450_050 Hb_001396_110--Hb_004450_050 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_000357_110 Hb_000357_110 Hb_001396_110--Hb_000357_110 Hb_085972_010 Hb_085972_010 Hb_001396_110--Hb_085972_010 Hb_006117_060--Hb_001396_110 Hb_001911_040 Hb_001911_040 Hb_006117_060--Hb_001911_040 Hb_003567_030 Hb_003567_030 Hb_006117_060--Hb_003567_030 Hb_006117_060--Hb_006643_020 Hb_000045_300 Hb_000045_300 Hb_006117_060--Hb_000045_300 Hb_006117_060--Hb_001189_040 Hb_001159_130 Hb_001159_130 Hb_001936_010--Hb_001159_130 Hb_092337_010 Hb_092337_010 Hb_001936_010--Hb_092337_010 Hb_094836_010 Hb_094836_010 Hb_001936_010--Hb_094836_010 Hb_000116_270 Hb_000116_270 Hb_001936_010--Hb_000116_270 Hb_001799_210 Hb_001799_210 Hb_001936_010--Hb_001799_210 Hb_002620_020 Hb_002620_020 Hb_001936_010--Hb_002620_020 Hb_001189_040--Hb_007926_050 Hb_002045_070 Hb_002045_070 Hb_001189_040--Hb_002045_070 Hb_038574_010 Hb_038574_010 Hb_001189_040--Hb_038574_010 Hb_000753_230 Hb_000753_230 Hb_001189_040--Hb_000753_230 Hb_000384_070 Hb_000384_070 Hb_001189_040--Hb_000384_070 Hb_033594_080 Hb_033594_080 Hb_001189_040--Hb_033594_080 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_004032_030 Hb_004032_030 Hb_002298_030--Hb_004032_030 Hb_005054_080 Hb_005054_080 Hb_002298_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_007926_050--Hb_002045_070 Hb_007926_050--Hb_033594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027608 0.0477532 0.0468046 0.0948852 0.00645941 0.0691419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0313122 0.0615998 0.0706131 0.0195542 0.02625

CAGE analysis