Hb_003470_060

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3470: 56253-57851
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03970g
description hypothetical protein
nr
ID XP_012075800.1
description PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
swissprot
ID O22900
description Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1
trembl
ID S5CKD9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY58 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_060 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
2 Hb_000189_220 0.1843818263 - - -
3 Hb_078081_020 0.2030316882 - - -
4 Hb_008226_020 0.2297866045 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
5 Hb_000751_050 0.2332472922 - - PREDICTED: extensin, partial [Solanum lycopersicum]
6 Hb_000203_220 0.2347271682 - - PREDICTED: uncharacterized protein LOC105168575 [Sesamum indicum]
7 Hb_146930_010 0.2424050047 - - -
8 Hb_000260_740 0.2426805329 - - -
9 Hb_012633_030 0.2450172348 - - hypothetical protein RCOM_0452240 [Ricinus communis]
10 Hb_021428_010 0.2459769894 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
11 Hb_178703_010 0.2498221392 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_156499_010 0.2498601686 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
13 Hb_105134_010 0.2525465389 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
14 Hb_000751_060 0.2582359007 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
15 Hb_005550_040 0.2593251412 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
16 Hb_032223_020 0.2606999181 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000330_120 0.2615679542 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
18 Hb_000574_250 0.2622465999 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
19 Hb_000645_250 0.2626113158 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
20 Hb_000009_430 0.26528299 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003470_060 Hb_003470_060 Hb_000189_220 Hb_000189_220 Hb_003470_060--Hb_000189_220 Hb_078081_020 Hb_078081_020 Hb_003470_060--Hb_078081_020 Hb_008226_020 Hb_008226_020 Hb_003470_060--Hb_008226_020 Hb_000751_050 Hb_000751_050 Hb_003470_060--Hb_000751_050 Hb_000203_220 Hb_000203_220 Hb_003470_060--Hb_000203_220 Hb_146930_010 Hb_146930_010 Hb_003470_060--Hb_146930_010 Hb_000260_740 Hb_000260_740 Hb_000189_220--Hb_000260_740 Hb_001157_170 Hb_001157_170 Hb_000189_220--Hb_001157_170 Hb_003450_010 Hb_003450_010 Hb_000189_220--Hb_003450_010 Hb_002042_040 Hb_002042_040 Hb_000189_220--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_000189_220--Hb_002157_060 Hb_078081_020--Hb_000751_050 Hb_078081_020--Hb_146930_010 Hb_000330_120 Hb_000330_120 Hb_078081_020--Hb_000330_120 Hb_130563_010 Hb_130563_010 Hb_078081_020--Hb_130563_010 Hb_105134_010 Hb_105134_010 Hb_078081_020--Hb_105134_010 Hb_011671_420 Hb_011671_420 Hb_078081_020--Hb_011671_420 Hb_008226_020--Hb_130563_010 Hb_000653_010 Hb_000653_010 Hb_008226_020--Hb_000653_010 Hb_036069_020 Hb_036069_020 Hb_008226_020--Hb_036069_020 Hb_000911_050 Hb_000911_050 Hb_008226_020--Hb_000911_050 Hb_003097_200 Hb_003097_200 Hb_008226_020--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_008226_020--Hb_001545_270 Hb_000751_050--Hb_146930_010 Hb_001597_090 Hb_001597_090 Hb_000751_050--Hb_001597_090 Hb_005550_040 Hb_005550_040 Hb_000751_050--Hb_005550_040 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010 Hb_004607_040 Hb_004607_040 Hb_000203_220--Hb_004607_040 Hb_012633_030 Hb_012633_030 Hb_000203_220--Hb_012633_030 Hb_001558_030 Hb_001558_030 Hb_000203_220--Hb_001558_030 Hb_004346_010 Hb_004346_010 Hb_000203_220--Hb_004346_010 Hb_002311_270 Hb_002311_270 Hb_000203_220--Hb_002311_270 Hb_000751_070 Hb_000751_070 Hb_146930_010--Hb_000751_070 Hb_146930_010--Hb_001597_090 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_007676_060 Hb_007676_060 Hb_146930_010--Hb_007676_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0815346 0.403588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226324 0 0 1.15918 0.610619

CAGE analysis