Hb_000189_220

Information

Type -
Description -
Location Contig189: 233249-235677
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18662: 233164-235905 , PASA_asmbl_18663: 235060-235631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_220 0.0 - - -
2 Hb_003470_060 0.1843818263 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
3 Hb_000260_740 0.2146808154 - - -
4 Hb_001157_170 0.2273492599 - - PREDICTED: uncharacterized protein LOC104597617 [Nelumbo nucifera]
5 Hb_003450_010 0.2548797966 - - -
6 Hb_002042_040 0.2661727479 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
7 Hb_002157_060 0.2697421254 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
8 Hb_002542_050 0.2712311635 - - -
9 Hb_165396_010 0.2717904613 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_012633_030 0.2793817261 - - hypothetical protein RCOM_0452240 [Ricinus communis]
11 Hb_104835_010 0.2803462137 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
12 Hb_001086_010 0.2829002063 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_021428_010 0.2975154813 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
14 Hb_000009_430 0.2998661947 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005155_040 0.3022127138 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
16 Hb_078081_020 0.3025650288 - - -
17 Hb_000946_130 0.3038492814 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
18 Hb_000138_080 0.3067940549 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000392_530 0.3139674904 - - hypothetical protein PHAVU_003G0695001g, partial [Phaseolus vulgaris]
20 Hb_004346_010 0.3250581682 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000189_220 Hb_000189_220 Hb_003470_060 Hb_003470_060 Hb_000189_220--Hb_003470_060 Hb_000260_740 Hb_000260_740 Hb_000189_220--Hb_000260_740 Hb_001157_170 Hb_001157_170 Hb_000189_220--Hb_001157_170 Hb_003450_010 Hb_003450_010 Hb_000189_220--Hb_003450_010 Hb_002042_040 Hb_002042_040 Hb_000189_220--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_000189_220--Hb_002157_060 Hb_078081_020 Hb_078081_020 Hb_003470_060--Hb_078081_020 Hb_008226_020 Hb_008226_020 Hb_003470_060--Hb_008226_020 Hb_000751_050 Hb_000751_050 Hb_003470_060--Hb_000751_050 Hb_000203_220 Hb_000203_220 Hb_003470_060--Hb_000203_220 Hb_146930_010 Hb_146930_010 Hb_003470_060--Hb_146930_010 Hb_000260_740--Hb_003450_010 Hb_001916_030 Hb_001916_030 Hb_000260_740--Hb_001916_030 Hb_021428_010 Hb_021428_010 Hb_000260_740--Hb_021428_010 Hb_130250_010 Hb_130250_010 Hb_000260_740--Hb_130250_010 Hb_003858_080 Hb_003858_080 Hb_000260_740--Hb_003858_080 Hb_172665_010 Hb_172665_010 Hb_001157_170--Hb_172665_010 Hb_017687_010 Hb_017687_010 Hb_001157_170--Hb_017687_010 Hb_108768_010 Hb_108768_010 Hb_001157_170--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_001157_170--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_001157_170--Hb_003155_060 Hb_000946_130 Hb_000946_130 Hb_003450_010--Hb_000946_130 Hb_006807_010 Hb_006807_010 Hb_003450_010--Hb_006807_010 Hb_002542_050 Hb_002542_050 Hb_003450_010--Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_003450_010--Hb_165396_010 Hb_000169_100 Hb_000169_100 Hb_003450_010--Hb_000169_100 Hb_001248_140 Hb_001248_140 Hb_003450_010--Hb_001248_140 Hb_002042_040--Hb_002157_060 Hb_002042_040--Hb_165396_010 Hb_002042_040--Hb_002542_050 Hb_002042_040--Hb_000946_130 Hb_104835_010 Hb_104835_010 Hb_002042_040--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_002042_040--Hb_169960_010 Hb_002157_060--Hb_165396_010 Hb_002157_060--Hb_002542_050 Hb_002157_060--Hb_000946_130 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.30046 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668268 0 0 1.74591 1.42274

CAGE analysis