Hb_000260_740

Information

Type -
Description -
Location Contig260: 553962-556107
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27058: 550641-556653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_740 0.0 - - -
2 Hb_003450_010 0.2021041793 - - -
3 Hb_001916_030 0.2054045464 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
4 Hb_021428_010 0.205490426 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
5 Hb_000189_220 0.2146808154 - - -
6 Hb_130250_010 0.2251081183 - - Putative disease resistance RGA4 [Gossypium arboreum]
7 Hb_003858_080 0.2303068997 - - Germin-like protein 2 [Theobroma cacao]
8 Hb_000117_150 0.2367777317 - - hypothetical protein RCOM_0079810 [Ricinus communis]
9 Hb_165396_010 0.2400625544 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_002542_050 0.2406459647 - - -
11 Hb_003470_060 0.2426805329 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
12 Hb_002157_060 0.2434797839 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
13 Hb_002042_040 0.2455444868 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
14 Hb_004346_010 0.2465450607 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005288_060 0.246860425 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
16 Hb_001675_040 0.2493944371 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000946_130 0.2495536316 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
18 Hb_182424_020 0.251038356 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
19 Hb_057556_010 0.2515131531 - - Light-regulated protein precursor, putative [Ricinus communis]
20 Hb_001369_270 0.2518423348 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_740 Hb_000260_740 Hb_003450_010 Hb_003450_010 Hb_000260_740--Hb_003450_010 Hb_001916_030 Hb_001916_030 Hb_000260_740--Hb_001916_030 Hb_021428_010 Hb_021428_010 Hb_000260_740--Hb_021428_010 Hb_000189_220 Hb_000189_220 Hb_000260_740--Hb_000189_220 Hb_130250_010 Hb_130250_010 Hb_000260_740--Hb_130250_010 Hb_003858_080 Hb_003858_080 Hb_000260_740--Hb_003858_080 Hb_000946_130 Hb_000946_130 Hb_003450_010--Hb_000946_130 Hb_006807_010 Hb_006807_010 Hb_003450_010--Hb_006807_010 Hb_002542_050 Hb_002542_050 Hb_003450_010--Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_003450_010--Hb_165396_010 Hb_000169_100 Hb_000169_100 Hb_003450_010--Hb_000169_100 Hb_001248_140 Hb_001248_140 Hb_003450_010--Hb_001248_140 Hb_004346_010 Hb_004346_010 Hb_001916_030--Hb_004346_010 Hb_001675_040 Hb_001675_040 Hb_001916_030--Hb_001675_040 Hb_007134_030 Hb_007134_030 Hb_001916_030--Hb_007134_030 Hb_000645_250 Hb_000645_250 Hb_001916_030--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_001916_030--Hb_060152_010 Hb_000373_060 Hb_000373_060 Hb_001916_030--Hb_000373_060 Hb_002529_070 Hb_002529_070 Hb_021428_010--Hb_002529_070 Hb_021428_010--Hb_130250_010 Hb_004021_020 Hb_004021_020 Hb_021428_010--Hb_004021_020 Hb_005288_060 Hb_005288_060 Hb_021428_010--Hb_005288_060 Hb_016835_020 Hb_016835_020 Hb_021428_010--Hb_016835_020 Hb_003470_060 Hb_003470_060 Hb_000189_220--Hb_003470_060 Hb_001157_170 Hb_001157_170 Hb_000189_220--Hb_001157_170 Hb_000189_220--Hb_003450_010 Hb_002042_040 Hb_002042_040 Hb_000189_220--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_000189_220--Hb_002157_060 Hb_134813_010 Hb_134813_010 Hb_130250_010--Hb_134813_010 Hb_006775_110 Hb_006775_110 Hb_130250_010--Hb_006775_110 Hb_002411_020 Hb_002411_020 Hb_130250_010--Hb_002411_020 Hb_000230_170 Hb_000230_170 Hb_130250_010--Hb_000230_170 Hb_000997_320 Hb_000997_320 Hb_130250_010--Hb_000997_320 Hb_003861_090 Hb_003861_090 Hb_003858_080--Hb_003861_090 Hb_003858_080--Hb_001675_040 Hb_001369_270 Hb_001369_270 Hb_003858_080--Hb_001369_270 Hb_006499_020 Hb_006499_020 Hb_003858_080--Hb_006499_020 Hb_003858_080--Hb_000373_060 Hb_168561_010 Hb_168561_010 Hb_003858_080--Hb_168561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.183692 2.09024 0 0.108044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.405301 0.106136 0 1.89797 2.57711

CAGE analysis