Hb_003450_010

Information

Type -
Description -
Location Contig3450: 32221-32710
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003450_010 0.0 - - -
2 Hb_000946_130 0.1640979608 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
3 Hb_006807_010 0.1691132411 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
4 Hb_002542_050 0.1750006433 - - -
5 Hb_165396_010 0.1751584854 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_000169_100 0.1753096335 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
7 Hb_001248_140 0.1762189679 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_003186_050 0.181951959 - - -
9 Hb_167457_010 0.1834868532 - - hypothetical protein glysoja_045622, partial [Glycine soja]
10 Hb_016835_020 0.1848759381 - - unnamed protein product [Coffea canephora]
11 Hb_011476_010 0.1859863689 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_151870_010 0.1903503537 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_000009_430 0.1912432777 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000054_130 0.1956349314 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
15 Hb_029727_010 0.1962547767 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000117_150 0.2009308154 - - hypothetical protein RCOM_0079810 [Ricinus communis]
17 Hb_000260_740 0.2021041793 - - -
18 Hb_002157_060 0.2084501724 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
19 Hb_001622_020 0.2104364576 - - -
20 Hb_002042_040 0.2109367384 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]

Gene co-expression network

sample Hb_003450_010 Hb_003450_010 Hb_000946_130 Hb_000946_130 Hb_003450_010--Hb_000946_130 Hb_006807_010 Hb_006807_010 Hb_003450_010--Hb_006807_010 Hb_002542_050 Hb_002542_050 Hb_003450_010--Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_003450_010--Hb_165396_010 Hb_000169_100 Hb_000169_100 Hb_003450_010--Hb_000169_100 Hb_001248_140 Hb_001248_140 Hb_003450_010--Hb_001248_140 Hb_000946_130--Hb_165396_010 Hb_000946_130--Hb_002542_050 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_003186_050 Hb_003186_050 Hb_000946_130--Hb_003186_050 Hb_002157_060 Hb_002157_060 Hb_000946_130--Hb_002157_060 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_151870_010 Hb_151870_010 Hb_006807_010--Hb_151870_010 Hb_002631_270 Hb_002631_270 Hb_006807_010--Hb_002631_270 Hb_006807_010--Hb_000169_100 Hb_155423_010 Hb_155423_010 Hb_006807_010--Hb_155423_010 Hb_017225_030 Hb_017225_030 Hb_006807_010--Hb_017225_030 Hb_029727_010 Hb_029727_010 Hb_006807_010--Hb_029727_010 Hb_002542_050--Hb_165396_010 Hb_002542_050--Hb_002157_060 Hb_002042_040 Hb_002042_040 Hb_002542_050--Hb_002042_040 Hb_104835_010 Hb_104835_010 Hb_002542_050--Hb_104835_010 Hb_002542_050--Hb_003186_050 Hb_165396_010--Hb_002157_060 Hb_165396_010--Hb_002042_040 Hb_165396_010--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_165396_010--Hb_169960_010 Hb_000169_100--Hb_029727_010 Hb_000169_100--Hb_017225_030 Hb_000169_100--Hb_002631_270 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_044380_010 Hb_044380_010 Hb_001248_140--Hb_044380_010 Hb_003714_030 Hb_003714_030 Hb_001248_140--Hb_003714_030 Hb_004530_010 Hb_004530_010 Hb_001248_140--Hb_004530_010 Hb_102761_010 Hb_102761_010 Hb_001248_140--Hb_102761_010 Hb_000054_130 Hb_000054_130 Hb_001248_140--Hb_000054_130 Hb_010721_040 Hb_010721_040 Hb_001248_140--Hb_010721_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156142 0.0632446 1.92456 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191014 0 0 2.24069 3.98474

CAGE analysis