Hb_001157_170

Information

Type -
Description -
Location Contig1157: 123446-125068
Sequence    

Annotation

kegg
ID rcu:RCOM_1455560
description hypothetical protein
nr
ID XP_010257568.1
description PREDICTED: uncharacterized protein LOC104597617 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID W9RQ53
description Uncharacterized protein OS=Morus notabilis GN=L484_016704 PE=4 SV=1
Gene Ontology
ID GO:0009941
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_170 0.0 - - PREDICTED: uncharacterized protein LOC104597617 [Nelumbo nucifera]
2 Hb_000189_220 0.2273492599 - - -
3 Hb_172665_010 0.2900177498 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_017687_010 0.2920580974 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
5 Hb_108768_010 0.3131257498 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_000576_100 0.3143030183 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_003155_060 0.3143975756 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_000260_740 0.3215477198 - - -
9 Hb_010121_020 0.3294147733 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003470_060 0.3310175644 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 45 [Jatropha curcas]
11 Hb_005155_040 0.3329628053 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
12 Hb_130250_010 0.3394353428 - - Putative disease resistance RGA4 [Gossypium arboreum]
13 Hb_003450_010 0.3406506967 - - -
14 Hb_021428_010 0.3436737307 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
15 Hb_000392_530 0.3473811156 - - hypothetical protein PHAVU_003G0695001g, partial [Phaseolus vulgaris]
16 Hb_007749_030 0.3526005479 - - -
17 Hb_005054_240 0.3579790014 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000028_380 0.3594964561 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
19 Hb_003487_010 0.3624591534 - - -
20 Hb_115572_040 0.3644193231 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_170 Hb_001157_170 Hb_000189_220 Hb_000189_220 Hb_001157_170--Hb_000189_220 Hb_172665_010 Hb_172665_010 Hb_001157_170--Hb_172665_010 Hb_017687_010 Hb_017687_010 Hb_001157_170--Hb_017687_010 Hb_108768_010 Hb_108768_010 Hb_001157_170--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_001157_170--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_001157_170--Hb_003155_060 Hb_003470_060 Hb_003470_060 Hb_000189_220--Hb_003470_060 Hb_000260_740 Hb_000260_740 Hb_000189_220--Hb_000260_740 Hb_003450_010 Hb_003450_010 Hb_000189_220--Hb_003450_010 Hb_002042_040 Hb_002042_040 Hb_000189_220--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_000189_220--Hb_002157_060 Hb_000331_520 Hb_000331_520 Hb_172665_010--Hb_000331_520 Hb_007157_010 Hb_007157_010 Hb_172665_010--Hb_007157_010 Hb_000837_010 Hb_000837_010 Hb_172665_010--Hb_000837_010 Hb_001519_020 Hb_001519_020 Hb_172665_010--Hb_001519_020 Hb_052764_100 Hb_052764_100 Hb_172665_010--Hb_052764_100 Hb_006452_230 Hb_006452_230 Hb_172665_010--Hb_006452_230 Hb_017687_010--Hb_108768_010 Hb_017687_010--Hb_000576_100 Hb_017687_010--Hb_003155_060 Hb_023161_030 Hb_023161_030 Hb_017687_010--Hb_023161_030 Hb_007749_030 Hb_007749_030 Hb_017687_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_017687_010--Hb_002536_020 Hb_108768_010--Hb_000576_100 Hb_108768_010--Hb_003155_060 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_003487_010 Hb_003487_010 Hb_108768_010--Hb_003487_010 Hb_000576_100--Hb_003155_060 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_003487_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_003155_060--Hb_003487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0959139 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168407 0 0 0.111664 0.239151

CAGE analysis