Hb_002477_060

Information

Type -
Description -
Location Contig2477: 28100-28549
Sequence    

Annotation

kegg
ID rcu:RCOM_0653430
description hypothetical protein
nr
ID XP_002521344.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SRQ8
description RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2
trembl
ID B9S5S5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653430 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004554_010 0.2611465843 - - PREDICTED: uncharacterized protein LOC105636233 isoform X1 [Jatropha curcas]
3 Hb_027654_070 0.2735916436 - - conserved hypothetical protein [Ricinus communis]
4 Hb_069512_010 0.2833015877 - - -
5 Hb_000300_070 0.2840020883 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_003209_190 0.2859286454 - - hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
7 Hb_000479_340 0.2871771813 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
8 Hb_000260_240 0.2879144101 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
9 Hb_001338_070 0.2886819779 - - ORF126 [Jatropha curcas]
10 Hb_000334_160 0.2897004205 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000445_310 0.2898875048 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
12 Hb_137222_030 0.2927981281 - - -
13 Hb_000637_070 0.29390893 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
14 Hb_004542_010 0.2939268011 - - Putative chloroplast RF19 [Medicago truncatula]
15 Hb_000110_240 0.2967049985 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
16 Hb_015026_030 0.2991172717 - - hypothetical protein POPTR_0011s04350g [Populus trichocarpa]
17 Hb_015531_010 0.3007312196 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
18 Hb_000163_140 0.3014769877 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
19 Hb_001019_070 0.3017436977 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
20 Hb_002400_010 0.3018730526 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_060 Hb_002477_060 Hb_004554_010 Hb_004554_010 Hb_002477_060--Hb_004554_010 Hb_027654_070 Hb_027654_070 Hb_002477_060--Hb_027654_070 Hb_069512_010 Hb_069512_010 Hb_002477_060--Hb_069512_010 Hb_000300_070 Hb_000300_070 Hb_002477_060--Hb_000300_070 Hb_003209_190 Hb_003209_190 Hb_002477_060--Hb_003209_190 Hb_000479_340 Hb_000479_340 Hb_002477_060--Hb_000479_340 Hb_000445_310 Hb_000445_310 Hb_004554_010--Hb_000445_310 Hb_000163_140 Hb_000163_140 Hb_004554_010--Hb_000163_140 Hb_152180_010 Hb_152180_010 Hb_004554_010--Hb_152180_010 Hb_004554_010--Hb_000300_070 Hb_014658_010 Hb_014658_010 Hb_004554_010--Hb_014658_010 Hb_031862_160 Hb_031862_160 Hb_004554_010--Hb_031862_160 Hb_001975_050 Hb_001975_050 Hb_027654_070--Hb_001975_050 Hb_003992_050 Hb_003992_050 Hb_027654_070--Hb_003992_050 Hb_001343_120 Hb_001343_120 Hb_027654_070--Hb_001343_120 Hb_000207_140 Hb_000207_140 Hb_027654_070--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_027654_070--Hb_002540_060 Hb_002435_090 Hb_002435_090 Hb_027654_070--Hb_002435_090 Hb_002043_100 Hb_002043_100 Hb_069512_010--Hb_002043_100 Hb_046157_010 Hb_046157_010 Hb_069512_010--Hb_046157_010 Hb_126933_020 Hb_126933_020 Hb_069512_010--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_069512_010--Hb_150651_020 Hb_002498_300 Hb_002498_300 Hb_069512_010--Hb_002498_300 Hb_004048_030 Hb_004048_030 Hb_069512_010--Hb_004048_030 Hb_000252_240 Hb_000252_240 Hb_000300_070--Hb_000252_240 Hb_000300_070--Hb_000445_310 Hb_000300_070--Hb_000163_140 Hb_001544_060 Hb_001544_060 Hb_000300_070--Hb_001544_060 Hb_124677_010 Hb_124677_010 Hb_000300_070--Hb_124677_010 Hb_002025_290 Hb_002025_290 Hb_000300_070--Hb_002025_290 Hb_002918_170 Hb_002918_170 Hb_003209_190--Hb_002918_170 Hb_003077_010 Hb_003077_010 Hb_003209_190--Hb_003077_010 Hb_003387_010 Hb_003387_010 Hb_003209_190--Hb_003387_010 Hb_000110_240 Hb_000110_240 Hb_003209_190--Hb_000110_240 Hb_012084_010 Hb_012084_010 Hb_003209_190--Hb_012084_010 Hb_001218_060 Hb_001218_060 Hb_003209_190--Hb_001218_060 Hb_065256_010 Hb_065256_010 Hb_000479_340--Hb_065256_010 Hb_005888_060 Hb_005888_060 Hb_000479_340--Hb_005888_060 Hb_005511_080 Hb_005511_080 Hb_000479_340--Hb_005511_080 Hb_023904_010 Hb_023904_010 Hb_000479_340--Hb_023904_010 Hb_000386_010 Hb_000386_010 Hb_000479_340--Hb_000386_010 Hb_002561_040 Hb_002561_040 Hb_000479_340--Hb_002561_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0590103 0.551765 0 0.0641978 0.0615678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0530238 0.229671

CAGE analysis