Hb_001862_090

Information

Type -
Description -
Location Contig1862: 88586-93031
Sequence    

Annotation

kegg
ID zma:103648418
description uncharacterized LOC103648418
nr
ID CAN76793.1
description hypothetical protein VITISV_026680 [Vitis vinifera]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5BEK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_090 0.0 - - hypothetical protein VITISV_026680 [Vitis vinifera]
2 Hb_002799_130 0.1896874835 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
3 Hb_000212_370 0.1955426957 - - thioredoxin f-type, putative [Ricinus communis]
4 Hb_009150_030 0.2000901643 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
5 Hb_001054_070 0.2003912333 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
6 Hb_002078_270 0.2012049146 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
7 Hb_007317_130 0.203416969 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
8 Hb_005917_030 0.2076113167 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004545_120 0.2187865498 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
10 Hb_000933_110 0.2239719127 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
11 Hb_001269_370 0.2254516395 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
12 Hb_001343_020 0.2263621572 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000483_100 0.2296869498 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
14 Hb_000548_060 0.2346660821 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
15 Hb_002188_030 0.2357682441 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000368_120 0.235982276 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
17 Hb_005015_020 0.2360606689 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_007576_150 0.2367514724 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
19 Hb_001247_110 0.2392953929 - - Polygalacturonase precursor, putative [Ricinus communis]
20 Hb_027445_100 0.2407093755 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_090 Hb_001862_090 Hb_002799_130 Hb_002799_130 Hb_001862_090--Hb_002799_130 Hb_000212_370 Hb_000212_370 Hb_001862_090--Hb_000212_370 Hb_009150_030 Hb_009150_030 Hb_001862_090--Hb_009150_030 Hb_001054_070 Hb_001054_070 Hb_001862_090--Hb_001054_070 Hb_002078_270 Hb_002078_270 Hb_001862_090--Hb_002078_270 Hb_007317_130 Hb_007317_130 Hb_001862_090--Hb_007317_130 Hb_005015_020 Hb_005015_020 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002928_030 Hb_002928_030 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_003929_220 Hb_003929_220 Hb_002799_130--Hb_003929_220 Hb_004324_120 Hb_004324_120 Hb_002799_130--Hb_004324_120 Hb_021079_020 Hb_021079_020 Hb_000212_370--Hb_021079_020 Hb_004162_190 Hb_004162_190 Hb_000212_370--Hb_004162_190 Hb_005288_180 Hb_005288_180 Hb_000212_370--Hb_005288_180 Hb_007576_150 Hb_007576_150 Hb_000212_370--Hb_007576_150 Hb_000212_370--Hb_002799_130 Hb_003494_130 Hb_003494_130 Hb_000212_370--Hb_003494_130 Hb_003124_110 Hb_003124_110 Hb_009150_030--Hb_003124_110 Hb_000120_040 Hb_000120_040 Hb_009150_030--Hb_000120_040 Hb_001214_180 Hb_001214_180 Hb_009150_030--Hb_001214_180 Hb_009150_030--Hb_007576_150 Hb_002290_030 Hb_002290_030 Hb_009150_030--Hb_002290_030 Hb_000318_130 Hb_000318_130 Hb_009150_030--Hb_000318_130 Hb_002343_010 Hb_002343_010 Hb_001054_070--Hb_002343_010 Hb_121089_020 Hb_121089_020 Hb_001054_070--Hb_121089_020 Hb_001269_370 Hb_001269_370 Hb_001054_070--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_001054_070--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001054_070--Hb_000506_110 Hb_008120_040 Hb_008120_040 Hb_001054_070--Hb_008120_040 Hb_005917_030 Hb_005917_030 Hb_002078_270--Hb_005917_030 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_005695_080 Hb_005695_080 Hb_002078_270--Hb_005695_080 Hb_002078_270--Hb_007317_130 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190 Hb_000958_100 Hb_000958_100 Hb_007317_130--Hb_000958_100 Hb_001080_030 Hb_001080_030 Hb_007317_130--Hb_001080_030 Hb_007317_130--Hb_000212_370 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146481 0.10722 0.103544 0.0131907 0.0114684 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0268492 0.031693 0.0404651 0.0167535 0.180552

CAGE analysis