Hb_001442_030

Information

Type -
Description -
Location Contig1442: 57705-59146
Sequence    

Annotation

kegg
ID mtr:MTR_1g015360
description Peroxisome biogenesis factor
nr
ID XP_003588927.1
description Peroxisome biogenesis factor [Medicago truncatula]
swissprot
ID -
description -
trembl
ID M0V2I7
description Uncharacterized protein (Fragment) OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0009987
description peroxisome biogenesis factor 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001442_030 0.0 - - Peroxisome biogenesis factor [Medicago truncatula]
2 Hb_002320_070 0.1808294052 - - conserved hypothetical protein [Ricinus communis]
3 Hb_126295_010 0.1878614835 - - PREDICTED: protein SEH1 [Jatropha curcas]
4 Hb_007137_060 0.190550874 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
5 Hb_076874_010 0.1937403939 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
6 Hb_073973_160 0.1986194527 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_058551_010 0.2014594062 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_070469_010 0.2031212467 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
9 Hb_005408_020 0.2031849169 - - conserved hypothetical protein [Ricinus communis]
10 Hb_121467_010 0.2032814164 - - tubulin-specific chaperone E, putative [Ricinus communis]
11 Hb_001910_020 0.203557719 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
12 Hb_003050_370 0.2037873486 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
13 Hb_124961_010 0.204406866 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
14 Hb_000025_050 0.2054894076 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_000152_670 0.2083170554 - - hypothetical protein VITISV_037603 [Vitis vinifera]
16 Hb_000189_510 0.2096066794 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_001247_280 0.2098164064 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
18 Hb_000021_020 0.2101619437 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
19 Hb_000125_040 0.2118275517 - - -
20 Hb_001752_040 0.2120373881 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001442_030 Hb_001442_030 Hb_002320_070 Hb_002320_070 Hb_001442_030--Hb_002320_070 Hb_126295_010 Hb_126295_010 Hb_001442_030--Hb_126295_010 Hb_007137_060 Hb_007137_060 Hb_001442_030--Hb_007137_060 Hb_076874_010 Hb_076874_010 Hb_001442_030--Hb_076874_010 Hb_073973_160 Hb_073973_160 Hb_001442_030--Hb_073973_160 Hb_058551_010 Hb_058551_010 Hb_001442_030--Hb_058551_010 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_012023_020 Hb_012023_020 Hb_126295_010--Hb_012023_020 Hb_002067_120 Hb_002067_120 Hb_126295_010--Hb_002067_120 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_002235_120 Hb_002235_120 Hb_007137_060--Hb_002235_120 Hb_077211_010 Hb_077211_010 Hb_007137_060--Hb_077211_010 Hb_004994_340 Hb_004994_340 Hb_007137_060--Hb_004994_340 Hb_130134_030 Hb_130134_030 Hb_007137_060--Hb_130134_030 Hb_020805_010 Hb_020805_010 Hb_007137_060--Hb_020805_010 Hb_076874_010--Hb_000025_050 Hb_003925_070 Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_076874_010--Hb_106411_010 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_001910_020 Hb_001910_020 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_000563_330 Hb_000563_330 Hb_058551_010--Hb_000563_330 Hb_003994_140 Hb_003994_140 Hb_058551_010--Hb_003994_140 Hb_000173_150 Hb_000173_150 Hb_058551_010--Hb_000173_150 Hb_000069_590 Hb_000069_590 Hb_058551_010--Hb_000069_590 Hb_039605_010 Hb_039605_010 Hb_058551_010--Hb_039605_010 Hb_000735_050 Hb_000735_050 Hb_058551_010--Hb_000735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.443972 0.541522 0.937443 0.559707 1.08902 1.59902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26467 0.208015 0.316825 0.184859 0

CAGE analysis