Hb_000739_230

Information

Type -
Description -
Location Contig739: 207552-208436
Sequence    

Annotation

kegg
ID pop:POPTR_0014s06650g
description POPTRDRAFT_663826; DNA-binding family protein
nr
ID XP_012083556.1
description PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
swissprot
ID O22130
description AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1
trembl
ID A0A067K910
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14511 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_230 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
2 Hb_000413_150 0.2711784775 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
3 Hb_005504_020 0.2934838846 - - -
4 Hb_069659_010 0.2953213692 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_000917_240 0.296481437 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
6 Hb_000189_070 0.2997973617 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
7 Hb_115116_010 0.299865612 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_008026_010 0.3008511032 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
9 Hb_005618_130 0.3022694494 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_004586_330 0.3024027519 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011344_100 0.3024057399 - - -
12 Hb_002687_020 0.3027715405 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006907_050 0.3034271424 - - unnamed protein product [Coffea canephora]
14 Hb_006483_060 0.3061898557 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
15 Hb_003674_020 0.3082833938 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
16 Hb_000707_040 0.3091045843 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
17 Hb_002217_040 0.3120889016 - - PREDICTED: boron transporter 1-like [Jatropha curcas]
18 Hb_006483_030 0.3125200702 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_065452_010 0.3130845513 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005464_010 0.3140831342 - - Thioredoxin H-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000739_230 Hb_000739_230 Hb_000413_150 Hb_000413_150 Hb_000739_230--Hb_000413_150 Hb_005504_020 Hb_005504_020 Hb_000739_230--Hb_005504_020 Hb_069659_010 Hb_069659_010 Hb_000739_230--Hb_069659_010 Hb_000917_240 Hb_000917_240 Hb_000739_230--Hb_000917_240 Hb_000189_070 Hb_000189_070 Hb_000739_230--Hb_000189_070 Hb_115116_010 Hb_115116_010 Hb_000739_230--Hb_115116_010 Hb_000197_170 Hb_000197_170 Hb_000413_150--Hb_000197_170 Hb_014919_020 Hb_014919_020 Hb_000413_150--Hb_014919_020 Hb_000406_010 Hb_000406_010 Hb_000413_150--Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000413_150--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000413_150--Hb_188411_010 Hb_000413_150--Hb_115116_010 Hb_006483_030 Hb_006483_030 Hb_005504_020--Hb_006483_030 Hb_007157_060 Hb_007157_060 Hb_005504_020--Hb_007157_060 Hb_000438_150 Hb_000438_150 Hb_005504_020--Hb_000438_150 Hb_005504_020--Hb_000406_010 Hb_065841_010 Hb_065841_010 Hb_005504_020--Hb_065841_010 Hb_008054_050 Hb_008054_050 Hb_005504_020--Hb_008054_050 Hb_002687_020 Hb_002687_020 Hb_069659_010--Hb_002687_020 Hb_004409_030 Hb_004409_030 Hb_069659_010--Hb_004409_030 Hb_000442_130 Hb_000442_130 Hb_069659_010--Hb_000442_130 Hb_001832_210 Hb_001832_210 Hb_069659_010--Hb_001832_210 Hb_000000_110 Hb_000000_110 Hb_069659_010--Hb_000000_110 Hb_001004_120 Hb_001004_120 Hb_069659_010--Hb_001004_120 Hb_000237_020 Hb_000237_020 Hb_000917_240--Hb_000237_020 Hb_003430_080 Hb_003430_080 Hb_000917_240--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000917_240--Hb_001053_210 Hb_000581_030 Hb_000581_030 Hb_000917_240--Hb_000581_030 Hb_000940_210 Hb_000940_210 Hb_000917_240--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_000917_240--Hb_023226_030 Hb_042491_010 Hb_042491_010 Hb_000189_070--Hb_042491_010 Hb_003647_040 Hb_003647_040 Hb_000189_070--Hb_003647_040 Hb_033053_020 Hb_033053_020 Hb_000189_070--Hb_033053_020 Hb_012727_010 Hb_012727_010 Hb_000189_070--Hb_012727_010 Hb_036176_010 Hb_036176_010 Hb_000189_070--Hb_036176_010 Hb_032050_070 Hb_032050_070 Hb_000189_070--Hb_032050_070 Hb_170516_010 Hb_170516_010 Hb_115116_010--Hb_170516_010 Hb_001907_130 Hb_001907_130 Hb_115116_010--Hb_001907_130 Hb_011344_100 Hb_011344_100 Hb_115116_010--Hb_011344_100 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_115116_010--Hb_014919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0515302 0.0259321 0.0580487 0.174186 0.0483177 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0938317 0

CAGE analysis