Hb_000497_040

Information

Type -
Description -
Location Contig497: 20466-20927
Sequence    

Annotation

kegg
ID dse:Dsec_GM24661
description GM24661 gene product from transcript GM24661-RA
nr
ID CDY03352.1
description BnaC09g09960D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078EQJ8
description BnaC09g09960D protein OS=Brassica napus GN=BnaC09g09960D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45512: 20401-21495
cDNA
(Sanger)
(ID:Location)		 003_F21.ab1: 13750-23518 , 009_E19.ab1: 13743-23521 , 015_D24.ab1: 13743-23419 , 031_F11.ab1: 13749-23421 , 041_H08.ab1: 13749-23489 , 049_C11.ab1: 20401-20907 , 052_K04.ab1: 20401-21151

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_040 0.0 - - BnaC09g09960D [Brassica napus]
2 Hb_003106_080 0.1332584861 - - cell division cycle, putative [Ricinus communis]
3 Hb_005488_140 0.1530620996 - - 30S ribosomal protein S5, putative [Ricinus communis]
4 Hb_000904_080 0.1555951724 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
5 Hb_002374_010 0.1582505147 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
6 Hb_004055_170 0.1634719253 - - nucleosome assembly protein, putative [Ricinus communis]
7 Hb_000077_320 0.1649258223 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
8 Hb_001089_110 0.1678261211 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001437_080 0.1703477529 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
10 Hb_001133_120 0.1707037157 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
11 Hb_153553_030 0.1715762824 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
12 Hb_075745_020 0.1717087942 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
13 Hb_002119_080 0.1730423586 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
14 Hb_009659_050 0.1740750067 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
15 Hb_002007_020 0.1750952066 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
16 Hb_000866_280 0.1756983835 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
17 Hb_000307_190 0.1761856958 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
18 Hb_000959_210 0.1762281031 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
19 Hb_002652_030 0.1771045591 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
20 Hb_005337_090 0.1774182678 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]

Gene co-expression network

sample Hb_000497_040 Hb_000497_040 Hb_003106_080 Hb_003106_080 Hb_000497_040--Hb_003106_080 Hb_005488_140 Hb_005488_140 Hb_000497_040--Hb_005488_140 Hb_000904_080 Hb_000904_080 Hb_000497_040--Hb_000904_080 Hb_002374_010 Hb_002374_010 Hb_000497_040--Hb_002374_010 Hb_004055_170 Hb_004055_170 Hb_000497_040--Hb_004055_170 Hb_000077_320 Hb_000077_320 Hb_000497_040--Hb_000077_320 Hb_002119_080 Hb_002119_080 Hb_003106_080--Hb_002119_080 Hb_000661_040 Hb_000661_040 Hb_003106_080--Hb_000661_040 Hb_001089_110 Hb_001089_110 Hb_003106_080--Hb_001089_110 Hb_005754_010 Hb_005754_010 Hb_003106_080--Hb_005754_010 Hb_000039_220 Hb_000039_220 Hb_003106_080--Hb_000039_220 Hb_000185_070 Hb_000185_070 Hb_005488_140--Hb_000185_070 Hb_000302_270 Hb_000302_270 Hb_005488_140--Hb_000302_270 Hb_180424_010 Hb_180424_010 Hb_005488_140--Hb_180424_010 Hb_153553_030 Hb_153553_030 Hb_005488_140--Hb_153553_030 Hb_000010_110 Hb_000010_110 Hb_005488_140--Hb_000010_110 Hb_003001_080 Hb_003001_080 Hb_005488_140--Hb_003001_080 Hb_004880_140 Hb_004880_140 Hb_000904_080--Hb_004880_140 Hb_000307_190 Hb_000307_190 Hb_000904_080--Hb_000307_190 Hb_007441_110 Hb_007441_110 Hb_000904_080--Hb_007441_110 Hb_011512_120 Hb_011512_120 Hb_000904_080--Hb_011512_120 Hb_004228_030 Hb_004228_030 Hb_000904_080--Hb_004228_030 Hb_000130_240 Hb_000130_240 Hb_000904_080--Hb_000130_240 Hb_002374_010--Hb_000077_320 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_011537_050 Hb_011537_050 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_003935_020 Hb_003935_020 Hb_004055_170--Hb_003935_020 Hb_009659_050 Hb_009659_050 Hb_004055_170--Hb_009659_050 Hb_021576_040 Hb_021576_040 Hb_004055_170--Hb_021576_040 Hb_002585_040 Hb_002585_040 Hb_004055_170--Hb_002585_040 Hb_002234_140 Hb_002234_140 Hb_004055_170--Hb_002234_140 Hb_000487_210 Hb_000487_210 Hb_004055_170--Hb_000487_210 Hb_000077_320--Hb_002784_020 Hb_004994_010 Hb_004994_010 Hb_000077_320--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_000077_320--Hb_002445_100 Hb_000617_230 Hb_000617_230 Hb_000077_320--Hb_000617_230 Hb_005779_010 Hb_005779_010 Hb_000077_320--Hb_005779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68097 4.33697 4.91365 1.09582 1.46536 5.43486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37987 6.02165 2.00489 4.03871 1.98823

CAGE analysis