Hb_000479_290

Information

Type -
Description -
Location Contig479: 204570-206208
Sequence    

Annotation

kegg
ID fve:101312472
description probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410-like
nr
ID XP_012084770.1
description PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M0T9P6
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005774
description probable mitochondrial saccharopine dehydrogenase-like oxidoreductase at5g39410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_290 0.0 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
2 Hb_000322_180 0.1725271938 - - recA family protein [Populus trichocarpa]
3 Hb_040747_010 0.1785397448 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
4 Hb_012506_010 0.1789804611 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
5 Hb_014819_010 0.1798484475 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000116_150 0.1810949079 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_133724_010 0.1848096697 - - conserved hypothetical protein [Ricinus communis]
8 Hb_181441_010 0.1921973526 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
9 Hb_004883_050 0.1928122197 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
10 Hb_099878_050 0.1931478912 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
11 Hb_077573_010 0.2024572626 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_013358_080 0.2032564368 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
13 Hb_003813_080 0.2037248888 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
14 Hb_003992_040 0.2042367405 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
15 Hb_002874_090 0.2052501468 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
16 Hb_012760_130 0.2056974326 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
17 Hb_004445_040 0.2083403196 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
18 Hb_013358_090 0.2083832108 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
19 Hb_001829_040 0.2092182899 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_011932_010 0.2096837157 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_290 Hb_000479_290 Hb_000322_180 Hb_000322_180 Hb_000479_290--Hb_000322_180 Hb_040747_010 Hb_040747_010 Hb_000479_290--Hb_040747_010 Hb_012506_010 Hb_012506_010 Hb_000479_290--Hb_012506_010 Hb_014819_010 Hb_014819_010 Hb_000479_290--Hb_014819_010 Hb_000116_150 Hb_000116_150 Hb_000479_290--Hb_000116_150 Hb_133724_010 Hb_133724_010 Hb_000479_290--Hb_133724_010 Hb_002874_090 Hb_002874_090 Hb_000322_180--Hb_002874_090 Hb_092000_010 Hb_092000_010 Hb_000322_180--Hb_092000_010 Hb_000088_050 Hb_000088_050 Hb_000322_180--Hb_000088_050 Hb_084513_010 Hb_084513_010 Hb_000322_180--Hb_084513_010 Hb_003363_080 Hb_003363_080 Hb_000322_180--Hb_003363_080 Hb_000017_230 Hb_000017_230 Hb_000322_180--Hb_000017_230 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_012506_010--Hb_077573_010 Hb_099878_050 Hb_099878_050 Hb_012506_010--Hb_099878_050 Hb_131035_010 Hb_131035_010 Hb_012506_010--Hb_131035_010 Hb_146081_010 Hb_146081_010 Hb_012506_010--Hb_146081_010 Hb_009787_050 Hb_009787_050 Hb_012506_010--Hb_009787_050 Hb_000836_550 Hb_000836_550 Hb_012506_010--Hb_000836_550 Hb_000731_220 Hb_000731_220 Hb_014819_010--Hb_000731_220 Hb_004544_040 Hb_004544_040 Hb_014819_010--Hb_004544_040 Hb_005381_020 Hb_005381_020 Hb_014819_010--Hb_005381_020 Hb_000445_470 Hb_000445_470 Hb_014819_010--Hb_000445_470 Hb_007062_040 Hb_007062_040 Hb_014819_010--Hb_007062_040 Hb_003912_040 Hb_003912_040 Hb_014819_010--Hb_003912_040 Hb_009247_010 Hb_009247_010 Hb_000116_150--Hb_009247_010 Hb_000116_150--Hb_146081_010 Hb_000890_030 Hb_000890_030 Hb_000116_150--Hb_000890_030 Hb_000390_250 Hb_000390_250 Hb_000116_150--Hb_000390_250 Hb_091675_010 Hb_091675_010 Hb_000116_150--Hb_091675_010 Hb_000098_050 Hb_000098_050 Hb_000116_150--Hb_000098_050 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_002388_010 Hb_002388_010 Hb_133724_010--Hb_002388_010 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95211 8.03774 7.98153 11.9881 0.333464 16.5445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86362 3.50248 2.33554 4.10491 3.37007

CAGE analysis