Hb_014819_010

Information

Type -
Description -
Location Contig14819: 2165-2557
Sequence    

Annotation

kegg
ID rcu:RCOM_1047530
description hypothetical protein
nr
ID XP_002514131.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RK87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014819_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000731_220 0.0944000417 - - PREDICTED: derlin-2.2 [Jatropha curcas]
3 Hb_004544_040 0.1099208724 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
4 Hb_005381_020 0.1114362854 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
5 Hb_000445_470 0.1116477151 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
6 Hb_007062_040 0.1124542092 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
7 Hb_003912_040 0.1187732157 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
8 Hb_001408_110 0.1205807101 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
9 Hb_006198_020 0.1216302555 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
10 Hb_002869_050 0.1217585383 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
11 Hb_001258_100 0.121865981 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_001366_090 0.1248647098 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
13 Hb_000205_130 0.1261525433 - - calcium ion binding protein, putative [Ricinus communis]
14 Hb_000046_570 0.1262611403 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
15 Hb_002874_090 0.1266748344 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
16 Hb_007062_030 0.1278478607 - - hypothetical protein VITISV_039033 [Vitis vinifera]
17 Hb_005015_080 0.1288892621 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
18 Hb_000418_010 0.1293922877 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
19 Hb_002983_080 0.1297803423 - - acetylornithine aminotransferase, partial [Prunus persica]
20 Hb_000390_250 0.1300394277 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_014819_010 Hb_014819_010 Hb_000731_220 Hb_000731_220 Hb_014819_010--Hb_000731_220 Hb_004544_040 Hb_004544_040 Hb_014819_010--Hb_004544_040 Hb_005381_020 Hb_005381_020 Hb_014819_010--Hb_005381_020 Hb_000445_470 Hb_000445_470 Hb_014819_010--Hb_000445_470 Hb_007062_040 Hb_007062_040 Hb_014819_010--Hb_007062_040 Hb_003912_040 Hb_003912_040 Hb_014819_010--Hb_003912_040 Hb_000731_220--Hb_007062_040 Hb_106552_020 Hb_106552_020 Hb_000731_220--Hb_106552_020 Hb_001922_150 Hb_001922_150 Hb_000731_220--Hb_001922_150 Hb_183433_010 Hb_183433_010 Hb_000731_220--Hb_183433_010 Hb_000416_110 Hb_000416_110 Hb_000731_220--Hb_000416_110 Hb_000087_060 Hb_000087_060 Hb_000731_220--Hb_000087_060 Hb_016461_020 Hb_016461_020 Hb_004544_040--Hb_016461_020 Hb_007955_050 Hb_007955_050 Hb_004544_040--Hb_007955_050 Hb_001408_110 Hb_001408_110 Hb_004544_040--Hb_001408_110 Hb_002874_090 Hb_002874_090 Hb_004544_040--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_004544_040--Hb_001558_040 Hb_001307_240 Hb_001307_240 Hb_004544_040--Hb_001307_240 Hb_000046_570 Hb_000046_570 Hb_005381_020--Hb_000046_570 Hb_005381_020--Hb_007062_040 Hb_000390_250 Hb_000390_250 Hb_005381_020--Hb_000390_250 Hb_000635_040 Hb_000635_040 Hb_005381_020--Hb_000635_040 Hb_001366_090 Hb_001366_090 Hb_005381_020--Hb_001366_090 Hb_002311_380 Hb_002311_380 Hb_005381_020--Hb_002311_380 Hb_000069_480 Hb_000069_480 Hb_000445_470--Hb_000069_480 Hb_000445_470--Hb_001408_110 Hb_000445_470--Hb_005381_020 Hb_004128_130 Hb_004128_130 Hb_000445_470--Hb_004128_130 Hb_001258_100 Hb_001258_100 Hb_000445_470--Hb_001258_100 Hb_000671_080 Hb_000671_080 Hb_000445_470--Hb_000671_080 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8527 44.2786 33.3673 39.9782 8.97541 34.2563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3207 25.1052 8.76453 21.5908 16.6938

CAGE analysis