Hb_000417_270

Information

Type -
Description -
Location Contig417: 219961-221178
Sequence    

Annotation

kegg
ID rcu:RCOM_1251020
description hypothetical protein
nr
ID XP_002522249.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002477_170 0.1634461675 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_065256_010 0.1771955258 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_005599_020 0.1803149494 - - Protein MLO, putative [Ricinus communis]
5 Hb_003349_020 0.2165255586 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
6 Hb_002279_020 0.2203443413 - - hypothetical protein POPTR_0009s03100g [Populus trichocarpa]
7 Hb_005694_100 0.2245642205 - - PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
8 Hb_008059_040 0.2318278945 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
9 Hb_000479_340 0.2330536815 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
10 Hb_103709_010 0.2338460496 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_034585_070 0.2342628613 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
12 Hb_005511_080 0.2374001535 - - Protein MLO, putative [Ricinus communis]
13 Hb_027065_010 0.2506087154 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
14 Hb_000140_250 0.2512377962 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
15 Hb_005888_060 0.2515668853 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
16 Hb_000668_100 0.2535395773 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
17 Hb_000073_070 0.2546867055 - - -
18 Hb_000495_090 0.2547353217 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_002893_140 0.2547913129 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
20 Hb_105632_010 0.2550860861 - - -

Gene co-expression network

sample Hb_000417_270 Hb_000417_270 Hb_002477_170 Hb_002477_170 Hb_000417_270--Hb_002477_170 Hb_065256_010 Hb_065256_010 Hb_000417_270--Hb_065256_010 Hb_005599_020 Hb_005599_020 Hb_000417_270--Hb_005599_020 Hb_003349_020 Hb_003349_020 Hb_000417_270--Hb_003349_020 Hb_002279_020 Hb_002279_020 Hb_000417_270--Hb_002279_020 Hb_005694_100 Hb_005694_100 Hb_000417_270--Hb_005694_100 Hb_002477_170--Hb_065256_010 Hb_002477_170--Hb_005599_020 Hb_135714_010 Hb_135714_010 Hb_002477_170--Hb_135714_010 Hb_002477_170--Hb_003349_020 Hb_000140_250 Hb_000140_250 Hb_002477_170--Hb_000140_250 Hb_005511_080 Hb_005511_080 Hb_065256_010--Hb_005511_080 Hb_065256_010--Hb_005599_020 Hb_034585_070 Hb_034585_070 Hb_065256_010--Hb_034585_070 Hb_005888_060 Hb_005888_060 Hb_065256_010--Hb_005888_060 Hb_000479_340 Hb_000479_340 Hb_065256_010--Hb_000479_340 Hb_103709_010 Hb_103709_010 Hb_065256_010--Hb_103709_010 Hb_005599_020--Hb_034585_070 Hb_140000_010 Hb_140000_010 Hb_005599_020--Hb_140000_010 Hb_018633_010 Hb_018633_010 Hb_005599_020--Hb_018633_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_000111_240 Hb_000111_240 Hb_005599_020--Hb_000111_240 Hb_023904_010 Hb_023904_010 Hb_003349_020--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_003349_020--Hb_001040_090 Hb_003349_020--Hb_135714_010 Hb_131719_010 Hb_131719_010 Hb_003349_020--Hb_131719_010 Hb_001953_110 Hb_001953_110 Hb_003349_020--Hb_001953_110 Hb_031685_010 Hb_031685_010 Hb_003349_020--Hb_031685_010 Hb_101034_020 Hb_101034_020 Hb_002279_020--Hb_101034_020 Hb_092458_010 Hb_092458_010 Hb_002279_020--Hb_092458_010 Hb_002279_020--Hb_018633_010 Hb_002279_020--Hb_140000_010 Hb_002279_020--Hb_005599_020 Hb_086614_010 Hb_086614_010 Hb_002279_020--Hb_086614_010 Hb_000668_100 Hb_000668_100 Hb_005694_100--Hb_000668_100 Hb_002301_330 Hb_002301_330 Hb_005694_100--Hb_002301_330 Hb_001022_020 Hb_001022_020 Hb_005694_100--Hb_001022_020 Hb_008059_040 Hb_008059_040 Hb_005694_100--Hb_008059_040 Hb_005694_100--Hb_065256_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.35367 1.0765 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.20169

CAGE analysis