Hb_002301_330

Information

Type -
Description -
Location Contig2301: 326231-327121
Sequence    

Annotation

kegg
ID rcu:RCOM_1674090
description late embryogenesis abundant, putative
nr
ID XP_012091627.1
description PREDICTED: late embryogenesis abundant protein, group 3-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JB00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21457 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_330 0.0 - - PREDICTED: late embryogenesis abundant protein, group 3-like [Jatropha curcas]
2 Hb_023904_010 0.1878410769 - - -
3 Hb_000479_340 0.1937973479 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
4 Hb_007576_130 0.1943799534 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
5 Hb_033312_120 0.1950180621 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
6 Hb_000668_100 0.1987520428 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
7 Hb_007254_010 0.1991693117 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
8 Hb_000445_310 0.201373841 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
9 Hb_065256_010 0.2024368936 - - tryptophan synthase beta chain, putative [Ricinus communis]
10 Hb_005694_100 0.2046338349 - - PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
11 Hb_000252_240 0.2058634995 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
12 Hb_033834_020 0.2058756032 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008707_040 0.2071038677 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001544_060 0.2081095351 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
15 Hb_005888_060 0.2103476842 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
16 Hb_000188_070 0.212566883 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_001638_190 0.2152180071 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_000386_010 0.2160844966 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001442_050 0.2165381966 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
20 Hb_001898_100 0.2171150707 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002301_330 Hb_002301_330 Hb_023904_010 Hb_023904_010 Hb_002301_330--Hb_023904_010 Hb_000479_340 Hb_000479_340 Hb_002301_330--Hb_000479_340 Hb_007576_130 Hb_007576_130 Hb_002301_330--Hb_007576_130 Hb_033312_120 Hb_033312_120 Hb_002301_330--Hb_033312_120 Hb_000668_100 Hb_000668_100 Hb_002301_330--Hb_000668_100 Hb_007254_010 Hb_007254_010 Hb_002301_330--Hb_007254_010 Hb_001953_110 Hb_001953_110 Hb_023904_010--Hb_001953_110 Hb_005227_030 Hb_005227_030 Hb_023904_010--Hb_005227_030 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_065256_010 Hb_065256_010 Hb_000479_340--Hb_065256_010 Hb_005888_060 Hb_005888_060 Hb_000479_340--Hb_005888_060 Hb_005511_080 Hb_005511_080 Hb_000479_340--Hb_005511_080 Hb_000479_340--Hb_023904_010 Hb_000479_340--Hb_000386_010 Hb_002561_040 Hb_002561_040 Hb_000479_340--Hb_002561_040 Hb_007120_130 Hb_007120_130 Hb_007576_130--Hb_007120_130 Hb_000538_250 Hb_000538_250 Hb_007576_130--Hb_000538_250 Hb_001638_190 Hb_001638_190 Hb_007576_130--Hb_001638_190 Hb_001898_100 Hb_001898_100 Hb_007576_130--Hb_001898_100 Hb_001352_030 Hb_001352_030 Hb_007576_130--Hb_001352_030 Hb_007576_130--Hb_003337_020 Hb_002027_100 Hb_002027_100 Hb_033312_120--Hb_002027_100 Hb_002025_220 Hb_002025_220 Hb_033312_120--Hb_002025_220 Hb_061126_010 Hb_061126_010 Hb_033312_120--Hb_061126_010 Hb_000483_470 Hb_000483_470 Hb_033312_120--Hb_000483_470 Hb_033312_120--Hb_023904_010 Hb_005305_140 Hb_005305_140 Hb_033312_120--Hb_005305_140 Hb_005694_100 Hb_005694_100 Hb_000668_100--Hb_005694_100 Hb_008059_040 Hb_008059_040 Hb_000668_100--Hb_008059_040 Hb_000668_100--Hb_005511_080 Hb_001022_020 Hb_001022_020 Hb_000668_100--Hb_001022_020 Hb_001241_020 Hb_001241_020 Hb_000668_100--Hb_001241_020 Hb_001218_060 Hb_001218_060 Hb_000668_100--Hb_001218_060 Hb_000692_060 Hb_000692_060 Hb_007254_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_007254_010--Hb_033834_020 Hb_000188_070 Hb_000188_070 Hb_007254_010--Hb_000188_070 Hb_000928_100 Hb_000928_100 Hb_007254_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0964355 0.534373 0.0302554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0575457 0 0.0233438 0.22957

CAGE analysis