Hb_005694_100

Information

Type -
Description -
Location Contig5694: 63178-63555
Sequence    

Annotation

kegg
ID rcu:RCOM_0715990
description ccd1, putative
nr
ID XP_011038704.1
description PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
swissprot
ID Q9ZPX9
description Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2
trembl
ID B9SBD1
description Ccd1, putative OS=Ricinus communis GN=RCOM_0715990 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein kic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_100 0.0 - - PREDICTED: calcium-binding protein KIC-like [Populus euphratica]
2 Hb_000668_100 0.1543860438 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
3 Hb_002301_330 0.2046338349 - - PREDICTED: late embryogenesis abundant protein, group 3-like [Jatropha curcas]
4 Hb_000417_270 0.2245642205 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001022_020 0.242211063 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
6 Hb_008059_040 0.2546811083 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
7 Hb_065256_010 0.2571370883 - - tryptophan synthase beta chain, putative [Ricinus communis]
8 Hb_140465_010 0.2576636337 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
9 Hb_000479_340 0.2643400128 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
10 Hb_005511_080 0.2669095717 - - Protein MLO, putative [Ricinus communis]
11 Hb_031862_160 0.2719128515 - - unnamed protein product [Vitis vinifera]
12 Hb_003038_110 0.2766710971 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
13 Hb_002477_170 0.2785175166 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_002639_170 0.2793801655 - - carboxy-lyase, putative [Ricinus communis]
15 Hb_103709_010 0.2834677832 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_005888_060 0.2897428461 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
17 Hb_001797_030 0.2898561647 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
18 Hb_000803_160 0.2901388417 - - hypothetical protein JCGZ_25955 [Jatropha curcas]
19 Hb_005599_020 0.2915351419 - - Protein MLO, putative [Ricinus communis]
20 Hb_001218_060 0.2917677381 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005694_100 Hb_005694_100 Hb_000668_100 Hb_000668_100 Hb_005694_100--Hb_000668_100 Hb_002301_330 Hb_002301_330 Hb_005694_100--Hb_002301_330 Hb_000417_270 Hb_000417_270 Hb_005694_100--Hb_000417_270 Hb_001022_020 Hb_001022_020 Hb_005694_100--Hb_001022_020 Hb_008059_040 Hb_008059_040 Hb_005694_100--Hb_008059_040 Hb_065256_010 Hb_065256_010 Hb_005694_100--Hb_065256_010 Hb_000668_100--Hb_008059_040 Hb_005511_080 Hb_005511_080 Hb_000668_100--Hb_005511_080 Hb_000668_100--Hb_001022_020 Hb_001241_020 Hb_001241_020 Hb_000668_100--Hb_001241_020 Hb_001218_060 Hb_001218_060 Hb_000668_100--Hb_001218_060 Hb_023904_010 Hb_023904_010 Hb_002301_330--Hb_023904_010 Hb_000479_340 Hb_000479_340 Hb_002301_330--Hb_000479_340 Hb_007576_130 Hb_007576_130 Hb_002301_330--Hb_007576_130 Hb_033312_120 Hb_033312_120 Hb_002301_330--Hb_033312_120 Hb_002301_330--Hb_000668_100 Hb_007254_010 Hb_007254_010 Hb_002301_330--Hb_007254_010 Hb_002477_170 Hb_002477_170 Hb_000417_270--Hb_002477_170 Hb_000417_270--Hb_065256_010 Hb_005599_020 Hb_005599_020 Hb_000417_270--Hb_005599_020 Hb_003349_020 Hb_003349_020 Hb_000417_270--Hb_003349_020 Hb_002279_020 Hb_002279_020 Hb_000417_270--Hb_002279_020 Hb_001396_040 Hb_001396_040 Hb_001022_020--Hb_001396_040 Hb_002374_200 Hb_002374_200 Hb_001022_020--Hb_002374_200 Hb_003038_110 Hb_003038_110 Hb_001022_020--Hb_003038_110 Hb_000042_020 Hb_000042_020 Hb_001022_020--Hb_000042_020 Hb_006120_120 Hb_006120_120 Hb_001022_020--Hb_006120_120 Hb_103709_010 Hb_103709_010 Hb_008059_040--Hb_103709_010 Hb_012084_010 Hb_012084_010 Hb_008059_040--Hb_012084_010 Hb_003964_050 Hb_003964_050 Hb_008059_040--Hb_003964_050 Hb_008059_040--Hb_001218_060 Hb_078954_020 Hb_078954_020 Hb_008059_040--Hb_078954_020 Hb_005839_080 Hb_005839_080 Hb_008059_040--Hb_005839_080 Hb_065256_010--Hb_005511_080 Hb_065256_010--Hb_005599_020 Hb_034585_070 Hb_034585_070 Hb_065256_010--Hb_034585_070 Hb_005888_060 Hb_005888_060 Hb_065256_010--Hb_005888_060 Hb_065256_010--Hb_000479_340 Hb_065256_010--Hb_103709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266359 1.39494 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.174958 0 0 0.30134

CAGE analysis