Hb_006120_120

Information

Type -
Description -
Location Contig6120: 64130-64666
Sequence    

Annotation

kegg
ID rcu:RCOM_1001820
description hypothetical protein
nr
ID XP_002519273.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1001820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51046: 64188-64663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001581_040 0.1652385489 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_005375_060 0.1686946643 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
4 Hb_000111_240 0.1742044509 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
5 Hb_002374_200 0.1742864434 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
6 Hb_001022_020 0.1848623631 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
7 Hb_001951_210 0.1868049668 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002107_110 0.1874239924 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
9 Hb_018633_010 0.1879057869 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000462_080 0.1924557595 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
11 Hb_042098_010 0.2004205479 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_000771_040 0.2017234483 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
13 Hb_006262_030 0.2074263709 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_002045_260 0.2075051278 - - calmodulin, putative [Ricinus communis]
15 Hb_004551_010 0.2076229799 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_002095_030 0.2080724604 - - hypothetical protein MIMGU_mgv1a021906mg, partial [Erythranthe guttata]
17 Hb_000359_260 0.2104655376 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
18 Hb_086614_010 0.2129653086 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
19 Hb_003058_030 0.2135542652 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000454_080 0.2151591957 - - PREDICTED: arginine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_006120_120 Hb_006120_120 Hb_001581_040 Hb_001581_040 Hb_006120_120--Hb_001581_040 Hb_005375_060 Hb_005375_060 Hb_006120_120--Hb_005375_060 Hb_000111_240 Hb_000111_240 Hb_006120_120--Hb_000111_240 Hb_002374_200 Hb_002374_200 Hb_006120_120--Hb_002374_200 Hb_001022_020 Hb_001022_020 Hb_006120_120--Hb_001022_020 Hb_001951_210 Hb_001951_210 Hb_006120_120--Hb_001951_210 Hb_000771_040 Hb_000771_040 Hb_001581_040--Hb_000771_040 Hb_001581_040--Hb_000111_240 Hb_042098_010 Hb_042098_010 Hb_001581_040--Hb_042098_010 Hb_018633_010 Hb_018633_010 Hb_001581_040--Hb_018633_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_005375_060--Hb_001581_040 Hb_007163_080 Hb_007163_080 Hb_005375_060--Hb_007163_080 Hb_002045_260 Hb_002045_260 Hb_005375_060--Hb_002045_260 Hb_000462_080 Hb_000462_080 Hb_005375_060--Hb_000462_080 Hb_011622_010 Hb_011622_010 Hb_005375_060--Hb_011622_010 Hb_005375_060--Hb_042098_010 Hb_000111_240--Hb_018633_010 Hb_140000_010 Hb_140000_010 Hb_000111_240--Hb_140000_010 Hb_000111_240--Hb_000771_040 Hb_086614_010 Hb_086614_010 Hb_000111_240--Hb_086614_010 Hb_077694_010 Hb_077694_010 Hb_000111_240--Hb_077694_010 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_000134_260 Hb_000134_260 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_001396_040 Hb_001396_040 Hb_001022_020--Hb_001396_040 Hb_001022_020--Hb_002374_200 Hb_003038_110 Hb_003038_110 Hb_001022_020--Hb_003038_110 Hb_000042_020 Hb_000042_020 Hb_001022_020--Hb_000042_020 Hb_000668_100 Hb_000668_100 Hb_001022_020--Hb_000668_100 Hb_008775_030 Hb_008775_030 Hb_001951_210--Hb_008775_030 Hb_001951_210--Hb_002374_200 Hb_000046_520 Hb_000046_520 Hb_001951_210--Hb_000046_520 Hb_003058_030 Hb_003058_030 Hb_001951_210--Hb_003058_030 Hb_001951_210--Hb_000134_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.68351 7.18468 1.0195 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.752137 0 1.35967 0.535206

CAGE analysis