Hb_001951_210

Information

Type -
Description -
Location Contig1951: 178899-179990
Sequence    

Annotation

kegg
ID rcu:RCOM_1454050
description hypothetical protein
nr
ID XP_002513124.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FTA0
description GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
trembl
ID B9RGH2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008775_030 0.1665418985 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
3 Hb_002374_200 0.1667479777 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_000046_520 0.1731136166 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_003058_030 0.1806688791 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_000134_260 0.1863455788 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_006120_120 0.1868049668 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000322_160 0.1886332849 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
9 Hb_001040_060 0.1916952598 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
10 Hb_003759_040 0.1922361279 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_003688_220 0.1959441929 - - unknown [Populus trichocarpa]
12 Hb_000152_780 0.1981336656 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_000462_080 0.2013150075 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
14 Hb_004712_090 0.2037131452 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
15 Hb_004970_070 0.2050710138 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
16 Hb_001022_020 0.2056094493 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
17 Hb_011918_030 0.2160931953 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
18 Hb_028487_040 0.2161763681 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
19 Hb_151103_010 0.2165586297 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001776_130 0.2175186531 - - metallothionein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001951_210 Hb_001951_210 Hb_008775_030 Hb_008775_030 Hb_001951_210--Hb_008775_030 Hb_002374_200 Hb_002374_200 Hb_001951_210--Hb_002374_200 Hb_000046_520 Hb_000046_520 Hb_001951_210--Hb_000046_520 Hb_003058_030 Hb_003058_030 Hb_001951_210--Hb_003058_030 Hb_000134_260 Hb_000134_260 Hb_001951_210--Hb_000134_260 Hb_006120_120 Hb_006120_120 Hb_001951_210--Hb_006120_120 Hb_008775_030--Hb_000046_520 Hb_000020_080 Hb_000020_080 Hb_008775_030--Hb_000020_080 Hb_000308_010 Hb_000308_010 Hb_008775_030--Hb_000308_010 Hb_001579_190 Hb_001579_190 Hb_008775_030--Hb_001579_190 Hb_011918_030 Hb_011918_030 Hb_008775_030--Hb_011918_030 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_003038_110 Hb_003038_110 Hb_000046_520--Hb_003038_110 Hb_107078_010 Hb_107078_010 Hb_000046_520--Hb_107078_010 Hb_002794_040 Hb_002794_040 Hb_000046_520--Hb_002794_040 Hb_007576_130 Hb_007576_130 Hb_000046_520--Hb_007576_130 Hb_000392_240 Hb_000392_240 Hb_000046_520--Hb_000392_240 Hb_003058_030--Hb_000134_260 Hb_008878_010 Hb_008878_010 Hb_003058_030--Hb_008878_010 Hb_003058_030--Hb_002374_200 Hb_001007_090 Hb_001007_090 Hb_003058_030--Hb_001007_090 Hb_001040_060 Hb_001040_060 Hb_003058_030--Hb_001040_060 Hb_001396_040 Hb_001396_040 Hb_003058_030--Hb_001396_040 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_001581_040 Hb_001581_040 Hb_006120_120--Hb_001581_040 Hb_005375_060 Hb_005375_060 Hb_006120_120--Hb_005375_060 Hb_000111_240 Hb_000111_240 Hb_006120_120--Hb_000111_240 Hb_006120_120--Hb_002374_200 Hb_001022_020 Hb_001022_020 Hb_006120_120--Hb_001022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.305764 0.786459 0.262805 0 0.0363502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.107917 0 0.0873996 0.108177

CAGE analysis