Hb_000327_370

Information

Type -
Description -
Location Contig327: 439352-440979
Sequence    

Annotation

kegg
ID tcc:TCM_046946
description NBS type disease resistance protein, putative
nr
ID XP_012073224.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LCH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34416: 437084-439860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_370 0.0 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_187677_010 0.2340269076 - - -
3 Hb_027010_030 0.2792067433 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_006153_180 0.2902863083 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
5 Hb_000245_120 0.2944218097 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
6 Hb_000115_010 0.2957840739 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_032718_010 0.2969670944 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_008033_060 0.2970479329 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_027472_190 0.3072257943 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_001045_110 0.3148876039 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
11 Hb_012463_010 0.3160971043 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
12 Hb_003540_220 0.3198456718 - - PREDICTED: thioredoxin [Jatropha curcas]
13 Hb_012565_040 0.3223659546 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
14 Hb_018609_030 0.3237640363 - - conserved hypothetical protein [Ricinus communis]
15 Hb_168180_010 0.3242384593 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003878_220 0.3252924529 - - vacuolar protein sorting, putative [Ricinus communis]
17 Hb_002527_050 0.3256743835 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
18 Hb_000173_440 0.3260148575 - - YALI0B05280p [Yarrowia lipolytica]
19 Hb_188303_010 0.3261292999 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_001310_050 0.3261529852 - - PREDICTED: formin-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_370 Hb_000327_370 Hb_187677_010 Hb_187677_010 Hb_000327_370--Hb_187677_010 Hb_027010_030 Hb_027010_030 Hb_000327_370--Hb_027010_030 Hb_006153_180 Hb_006153_180 Hb_000327_370--Hb_006153_180 Hb_000245_120 Hb_000245_120 Hb_000327_370--Hb_000245_120 Hb_000115_010 Hb_000115_010 Hb_000327_370--Hb_000115_010 Hb_032718_010 Hb_032718_010 Hb_000327_370--Hb_032718_010 Hb_000364_190 Hb_000364_190 Hb_187677_010--Hb_000364_190 Hb_161010_010 Hb_161010_010 Hb_187677_010--Hb_161010_010 Hb_012565_040 Hb_012565_040 Hb_187677_010--Hb_012565_040 Hb_002659_030 Hb_002659_030 Hb_187677_010--Hb_002659_030 Hb_003878_220 Hb_003878_220 Hb_187677_010--Hb_003878_220 Hb_027010_030--Hb_032718_010 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_053079_010 Hb_053079_010 Hb_027010_030--Hb_053079_010 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_006153_180--Hb_003878_220 Hb_008790_040 Hb_008790_040 Hb_006153_180--Hb_008790_040 Hb_000975_200 Hb_000975_200 Hb_006153_180--Hb_000975_200 Hb_011861_090 Hb_011861_090 Hb_006153_180--Hb_011861_090 Hb_000069_150 Hb_000069_150 Hb_006153_180--Hb_000069_150 Hb_002909_110 Hb_002909_110 Hb_006153_180--Hb_002909_110 Hb_005742_010 Hb_005742_010 Hb_000245_120--Hb_005742_010 Hb_041813_080 Hb_041813_080 Hb_000245_120--Hb_041813_080 Hb_002073_110 Hb_002073_110 Hb_000245_120--Hb_002073_110 Hb_006040_050 Hb_006040_050 Hb_000245_120--Hb_006040_050 Hb_000245_120--Hb_027010_030 Hb_143769_010 Hb_143769_010 Hb_000245_120--Hb_143769_010 Hb_000820_050 Hb_000820_050 Hb_000115_010--Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010 Hb_000890_180 Hb_000890_180 Hb_032718_010--Hb_000890_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.194795 0 0.480554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.404891 0.306575 0.446081

CAGE analysis