Hb_000117_080

Information

Type -
Description -
Location Contig117: 108016-109890
Sequence    

Annotation

kegg
ID rcu:RCOM_0701700
description Endosomal P24A protein precursor, putative
nr
ID XP_012071431.1
description PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
swissprot
ID Q9FYQ8
description Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana GN=TMN11 PE=2 SV=1
trembl
ID A0A067KUH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03976 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05270: 108770-109030 , PASA_asmbl_05271: 109752-110164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_080 0.0 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
2 Hb_005694_010 0.1876757657 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
3 Hb_106688_010 0.2102958515 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_170674_010 0.214735948 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
5 Hb_003038_220 0.220220529 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
6 Hb_008054_050 0.2214929949 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
7 Hb_003640_020 0.223002509 - - pelota, putative [Ricinus communis]
8 Hb_089140_120 0.2232769053 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
9 Hb_000438_090 0.2266822168 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
10 Hb_145317_010 0.2276871278 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
11 Hb_002388_010 0.2282120692 - - -
12 Hb_005686_120 0.2333247976 - - -
13 Hb_005539_310 0.2347706379 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
14 Hb_001255_010 0.2355522728 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
15 Hb_063716_090 0.2359131161 - - conserved hypothetical protein [Ricinus communis]
16 Hb_018691_010 0.2364446709 - - -
17 Hb_002250_050 0.2372121905 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
18 Hb_027760_070 0.2381994272 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
19 Hb_118507_010 0.2383815821 - - hypothetical protein VITISV_019292 [Vitis vinifera]
20 Hb_005843_130 0.2385316651 - - hypothetical protein JCGZ_12389 [Jatropha curcas]

Gene co-expression network

sample Hb_000117_080 Hb_000117_080 Hb_005694_010 Hb_005694_010 Hb_000117_080--Hb_005694_010 Hb_106688_010 Hb_106688_010 Hb_000117_080--Hb_106688_010 Hb_170674_010 Hb_170674_010 Hb_000117_080--Hb_170674_010 Hb_003038_220 Hb_003038_220 Hb_000117_080--Hb_003038_220 Hb_008054_050 Hb_008054_050 Hb_000117_080--Hb_008054_050 Hb_003640_020 Hb_003640_020 Hb_000117_080--Hb_003640_020 Hb_005694_010--Hb_003640_020 Hb_000331_280 Hb_000331_280 Hb_005694_010--Hb_000331_280 Hb_027760_070 Hb_027760_070 Hb_005694_010--Hb_027760_070 Hb_000418_010 Hb_000418_010 Hb_005694_010--Hb_000418_010 Hb_000245_080 Hb_000245_080 Hb_005694_010--Hb_000245_080 Hb_000457_140 Hb_000457_140 Hb_005694_010--Hb_000457_140 Hb_165402_010 Hb_165402_010 Hb_106688_010--Hb_165402_010 Hb_007441_090 Hb_007441_090 Hb_106688_010--Hb_007441_090 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_085364_010 Hb_085364_010 Hb_170674_010--Hb_085364_010 Hb_001484_100 Hb_001484_100 Hb_170674_010--Hb_001484_100 Hb_002311_140 Hb_002311_140 Hb_170674_010--Hb_002311_140 Hb_170674_010--Hb_003640_020 Hb_003078_030 Hb_003078_030 Hb_170674_010--Hb_003078_030 Hb_000179_180 Hb_000179_180 Hb_170674_010--Hb_000179_180 Hb_015354_010 Hb_015354_010 Hb_003038_220--Hb_015354_010 Hb_012760_130 Hb_012760_130 Hb_003038_220--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_003038_220--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_003038_220--Hb_003925_070 Hb_004883_050 Hb_004883_050 Hb_003038_220--Hb_004883_050 Hb_004935_080 Hb_004935_080 Hb_003038_220--Hb_004935_080 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_161994_040 Hb_161994_040 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_056987_010 Hb_056987_010 Hb_003640_020--Hb_056987_010 Hb_002027_380 Hb_002027_380 Hb_003640_020--Hb_002027_380 Hb_073171_090 Hb_073171_090 Hb_003640_020--Hb_073171_090 Hb_003640_020--Hb_085364_010 Hb_167234_010 Hb_167234_010 Hb_003640_020--Hb_167234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238976 0.0775763 0.0417361 0.134808 0.0534061 0.0620287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242496 0.0381597 0 0.0379783 0

CAGE analysis