Hb_000092_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig92: 75268-77957
Sequence    

Annotation

kegg
ID cit:102617366
description putative disease resistance protein At1g50180-like
nr
ID CAN70214.1
description hypothetical protein VITISV_038742 [Vitis vinifera]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID A5BIR4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038742 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62363: 75341-75449 , PASA_asmbl_62367: 76972-77553 , PASA_asmbl_62368: 77756-78021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_080 0.0 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
2 Hb_000417_120 0.132308794 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_002343_020 0.1331208719 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
4 Hb_017604_020 0.1355747777 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
5 Hb_019040_010 0.1386337845 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
6 Hb_003556_070 0.1412983623 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_000402_030 0.1461196401 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
8 Hb_003529_230 0.1524936053 transcription factor TF Family: ERF -
9 Hb_000382_030 0.1534159775 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
10 Hb_000771_030 0.1541461059 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
11 Hb_000679_260 0.1546295657 - - conserved hypothetical protein [Ricinus communis]
12 Hb_025236_020 0.15499845 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
13 Hb_000098_250 0.1550890072 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
14 Hb_009510_050 0.1553230042 - - conserved hypothetical protein [Ricinus communis]
15 Hb_082870_010 0.1559122639 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_004544_090 0.1564275642 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000237_070 0.1587803174 - - Purple acid phosphatase precursor, putative [Ricinus communis]
18 Hb_001123_170 0.1589905524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001538_050 0.16244496 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
20 Hb_001699_050 0.1641809741 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]

Gene co-expression network

sample Hb_000092_080 Hb_000092_080 Hb_000417_120 Hb_000417_120 Hb_000092_080--Hb_000417_120 Hb_002343_020 Hb_002343_020 Hb_000092_080--Hb_002343_020 Hb_017604_020 Hb_017604_020 Hb_000092_080--Hb_017604_020 Hb_019040_010 Hb_019040_010 Hb_000092_080--Hb_019040_010 Hb_003556_070 Hb_003556_070 Hb_000092_080--Hb_003556_070 Hb_000402_030 Hb_000402_030 Hb_000092_080--Hb_000402_030 Hb_000771_030 Hb_000771_030 Hb_000417_120--Hb_000771_030 Hb_000598_020 Hb_000598_020 Hb_000417_120--Hb_000598_020 Hb_065230_010 Hb_065230_010 Hb_000417_120--Hb_065230_010 Hb_000382_030 Hb_000382_030 Hb_000417_120--Hb_000382_030 Hb_000237_070 Hb_000237_070 Hb_000417_120--Hb_000237_070 Hb_000075_110 Hb_000075_110 Hb_000417_120--Hb_000075_110 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_003602_090 Hb_003602_090 Hb_019040_010--Hb_003602_090 Hb_019040_010--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_019040_010--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_019040_010--Hb_082870_010 Hb_019040_010--Hb_000771_030 Hb_019040_010--Hb_017604_020 Hb_073119_010 Hb_073119_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_000120_070 Hb_000120_070 Hb_003556_070--Hb_000120_070 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178657 3.0012 1.45693 1.1276 0 0.108372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.29348 0.440453

CAGE analysis