Hb_138781_010

Information

Type -
Description -
Location Contig138781: 7-834
Sequence    

Annotation

kegg
ID rcu:RCOM_0760970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082370.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
swissprot
ID Q9ZUU3
description Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
trembl
ID A0A067JYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16511 PE=4 SV=1
Gene Ontology
ID GO:0009535
description pentatricopeptide repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138781_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
2 Hb_032920_050 0.1180332483 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
3 Hb_007994_010 0.1213165923 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
4 Hb_135572_010 0.122047677 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_002897_090 0.1223883545 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000731_010 0.1245916936 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
7 Hb_009252_040 0.1246085066 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
8 Hb_027337_100 0.1257369612 - - Putative phagocytic receptor 1b [Gossypium arboreum]
9 Hb_007922_020 0.1268938765 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
10 Hb_000815_170 0.1275089168 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
11 Hb_000809_230 0.1282745238 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
12 Hb_000749_090 0.1323332802 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_006274_050 0.1332350247 - - hypothetical protein VITISV_022618 [Vitis vinifera]
14 Hb_005250_030 0.1334808417 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
15 Hb_005801_020 0.1338953489 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
16 Hb_007101_080 0.134452571 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
17 Hb_006373_040 0.1349690274 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
18 Hb_000033_110 0.1351876783 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
19 Hb_000347_560 0.1370405013 - - -
20 Hb_012194_050 0.1377933812 - - Aspartyl aminopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_138781_010 Hb_138781_010 Hb_032920_050 Hb_032920_050 Hb_138781_010--Hb_032920_050 Hb_007994_010 Hb_007994_010 Hb_138781_010--Hb_007994_010 Hb_135572_010 Hb_135572_010 Hb_138781_010--Hb_135572_010 Hb_002897_090 Hb_002897_090 Hb_138781_010--Hb_002897_090 Hb_000731_010 Hb_000731_010 Hb_138781_010--Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_138781_010--Hb_009252_040 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_032920_050--Hb_000130_320 Hb_000613_110 Hb_000613_110 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_003994_110 Hb_003994_110 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_002027_080 Hb_002027_080 Hb_002897_090--Hb_002027_080 Hb_002883_030 Hb_002883_030 Hb_002897_090--Hb_002883_030 Hb_000359_210 Hb_000359_210 Hb_002897_090--Hb_000359_210 Hb_004679_030 Hb_004679_030 Hb_002897_090--Hb_004679_030 Hb_000441_090 Hb_000441_090 Hb_002897_090--Hb_000441_090 Hb_122968_010 Hb_122968_010 Hb_002897_090--Hb_122968_010 Hb_000731_010--Hb_009252_040 Hb_000749_090 Hb_000749_090 Hb_000731_010--Hb_000749_090 Hb_004003_040 Hb_004003_040 Hb_000731_010--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000731_010--Hb_000538_280 Hb_000331_560 Hb_000331_560 Hb_000731_010--Hb_000331_560 Hb_000731_010--Hb_135572_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_009252_040--Hb_000331_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23328 2.65603 2.3727 4.81639 2.79526 7.70003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54779 2.38345 2.85246 4.18249 9.80532

CAGE analysis