Hb_132840_130

Information

Type -
Description -
Location Contig132840: 81178-89831
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10130g
description POPTRDRAFT_774563; hypothetical protein
nr
ID XP_012083103.1
description PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q0P5W1
description Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus GN=Vps8 PE=2 SV=1
trembl
ID B9I947
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10130g PE=4 SV=2
Gene Ontology
ID GO:0005515
description vacuolar protein sorting-associated protein 8 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_130 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Jatropha curcas]
2 Hb_000310_070 0.3045867948 - - BnaA06g08330D [Brassica napus]
3 Hb_005344_030 0.3142180825 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
4 Hb_033152_040 0.3211556587 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
5 Hb_001433_130 0.3245038179 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
6 Hb_000679_220 0.3246924356 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
7 Hb_156182_010 0.3259404547 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_000608_460 0.327126175 - - -
9 Hb_014568_020 0.3277212269 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
10 Hb_002888_010 0.3425475123 - - -
11 Hb_007479_030 0.350106396 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
12 Hb_002936_080 0.351195206 - - Protein bem46, putative [Ricinus communis]
13 Hb_002875_060 0.3537746664 - - hypothetical protein L484_023461 [Morus notabilis]
14 Hb_054865_140 0.3543665533 - - -
15 Hb_000915_030 0.3546982874 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_162633_010 0.3599904276 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
17 Hb_001229_020 0.3635468066 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
18 Hb_003005_040 0.3638670071 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_004672_030 0.3646509523 - - proline oxidase [Manihot esculenta]
20 Hb_181240_010 0.3654072031 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_132840_130 Hb_132840_130 Hb_000310_070 Hb_000310_070 Hb_132840_130--Hb_000310_070 Hb_005344_030 Hb_005344_030 Hb_132840_130--Hb_005344_030 Hb_033152_040 Hb_033152_040 Hb_132840_130--Hb_033152_040 Hb_001433_130 Hb_001433_130 Hb_132840_130--Hb_001433_130 Hb_000679_220 Hb_000679_220 Hb_132840_130--Hb_000679_220 Hb_156182_010 Hb_156182_010 Hb_132840_130--Hb_156182_010 Hb_000429_090 Hb_000429_090 Hb_000310_070--Hb_000429_090 Hb_002936_080 Hb_002936_080 Hb_000310_070--Hb_002936_080 Hb_000530_120 Hb_000530_120 Hb_000310_070--Hb_000530_120 Hb_073490_020 Hb_073490_020 Hb_000310_070--Hb_073490_020 Hb_004162_260 Hb_004162_260 Hb_000310_070--Hb_004162_260 Hb_091194_010 Hb_091194_010 Hb_000310_070--Hb_091194_010 Hb_006132_030 Hb_006132_030 Hb_005344_030--Hb_006132_030 Hb_002918_050 Hb_002918_050 Hb_005344_030--Hb_002918_050 Hb_000052_020 Hb_000052_020 Hb_005344_030--Hb_000052_020 Hb_005344_030--Hb_000429_090 Hb_000622_240 Hb_000622_240 Hb_005344_030--Hb_000622_240 Hb_005344_030--Hb_091194_010 Hb_007479_030 Hb_007479_030 Hb_033152_040--Hb_007479_030 Hb_114861_010 Hb_114861_010 Hb_033152_040--Hb_114861_010 Hb_006538_180 Hb_006538_180 Hb_033152_040--Hb_006538_180 Hb_001484_080 Hb_001484_080 Hb_033152_040--Hb_001484_080 Hb_000184_030 Hb_000184_030 Hb_033152_040--Hb_000184_030 Hb_000387_090 Hb_000387_090 Hb_033152_040--Hb_000387_090 Hb_000856_150 Hb_000856_150 Hb_001433_130--Hb_000856_150 Hb_001399_010 Hb_001399_010 Hb_001433_130--Hb_001399_010 Hb_002503_020 Hb_002503_020 Hb_001433_130--Hb_002503_020 Hb_002875_060 Hb_002875_060 Hb_001433_130--Hb_002875_060 Hb_001946_330 Hb_001946_330 Hb_001433_130--Hb_001946_330 Hb_000853_190 Hb_000853_190 Hb_001433_130--Hb_000853_190 Hb_094900_010 Hb_094900_010 Hb_000679_220--Hb_094900_010 Hb_001059_170 Hb_001059_170 Hb_000679_220--Hb_001059_170 Hb_000389_050 Hb_000389_050 Hb_000679_220--Hb_000389_050 Hb_000679_220--Hb_002936_080 Hb_000679_220--Hb_005344_030 Hb_004672_030 Hb_004672_030 Hb_000679_220--Hb_004672_030 Hb_115940_010 Hb_115940_010 Hb_156182_010--Hb_115940_010 Hb_001366_070 Hb_001366_070 Hb_156182_010--Hb_001366_070 Hb_006738_030 Hb_006738_030 Hb_156182_010--Hb_006738_030 Hb_021888_070 Hb_021888_070 Hb_156182_010--Hb_021888_070 Hb_156182_010--Hb_002918_050 Hb_073866_010 Hb_073866_010 Hb_156182_010--Hb_073866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0125949 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0128644 0.0101235 0.0194001 0 0.0216418

CAGE analysis