Hb_065525_140

Information

Type -
Description -
Location Contig65525: 117489-119883
Sequence    

Annotation

kegg
ID rcu:RCOM_1510530
description 50S ribosomal protein L7/L12, putative
nr
ID XP_012080061.1
description PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11471 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_140 0.0 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
2 Hb_000078_020 0.2261728997 - - -
3 Hb_000367_170 0.2463743456 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
4 Hb_001102_100 0.257523679 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
5 Hb_129204_010 0.2603749289 - - LOC100284182 [Zea mays]
6 Hb_001277_080 0.2711911657 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
7 Hb_001085_180 0.2739502593 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183612_080 0.2804573708 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
9 Hb_015978_070 0.2834725284 - - -
10 Hb_020247_060 0.2835206695 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
11 Hb_000258_280 0.286309616 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
12 Hb_030565_040 0.2910945634 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
13 Hb_001587_060 0.2949351762 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001575_030 0.2972459668 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
15 Hb_004223_200 0.2991888697 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
16 Hb_086692_020 0.3014954534 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
17 Hb_000106_090 0.3034026146 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
18 Hb_000184_220 0.3036799068 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
19 Hb_012305_020 0.3039223599 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_183612_090 0.306143486 - - -

Gene co-expression network

sample Hb_065525_140 Hb_065525_140 Hb_000078_020 Hb_000078_020 Hb_065525_140--Hb_000078_020 Hb_000367_170 Hb_000367_170 Hb_065525_140--Hb_000367_170 Hb_001102_100 Hb_001102_100 Hb_065525_140--Hb_001102_100 Hb_129204_010 Hb_129204_010 Hb_065525_140--Hb_129204_010 Hb_001277_080 Hb_001277_080 Hb_065525_140--Hb_001277_080 Hb_001085_180 Hb_001085_180 Hb_065525_140--Hb_001085_180 Hb_000316_100 Hb_000316_100 Hb_000078_020--Hb_000316_100 Hb_000033_040 Hb_000033_040 Hb_000078_020--Hb_000033_040 Hb_027892_040 Hb_027892_040 Hb_000078_020--Hb_027892_040 Hb_000340_440 Hb_000340_440 Hb_000078_020--Hb_000340_440 Hb_002045_230 Hb_002045_230 Hb_000078_020--Hb_002045_230 Hb_004159_050 Hb_004159_050 Hb_000078_020--Hb_004159_050 Hb_015978_070 Hb_015978_070 Hb_000367_170--Hb_015978_070 Hb_001575_030 Hb_001575_030 Hb_000367_170--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_000367_170--Hb_001610_130 Hb_011310_060 Hb_011310_060 Hb_000367_170--Hb_011310_060 Hb_001053_160 Hb_001053_160 Hb_000367_170--Hb_001053_160 Hb_000009_040 Hb_000009_040 Hb_000367_170--Hb_000009_040 Hb_000270_730 Hb_000270_730 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001102_100--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_001102_100--Hb_005772_010 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_002784_140 Hb_002784_140 Hb_001102_100--Hb_002784_140 Hb_000345_430 Hb_000345_430 Hb_129204_010--Hb_000345_430 Hb_129204_010--Hb_001575_030 Hb_129204_010--Hb_015978_070 Hb_006541_020 Hb_006541_020 Hb_129204_010--Hb_006541_020 Hb_001587_060 Hb_001587_060 Hb_129204_010--Hb_001587_060 Hb_129204_010--Hb_001610_130 Hb_004414_040 Hb_004414_040 Hb_001277_080--Hb_004414_040 Hb_004968_070 Hb_004968_070 Hb_001277_080--Hb_004968_070 Hb_001277_080--Hb_002784_140 Hb_001277_080--Hb_000270_730 Hb_002784_150 Hb_002784_150 Hb_001277_080--Hb_002784_150 Hb_012305_020 Hb_012305_020 Hb_001085_180--Hb_012305_020 Hb_183612_090 Hb_183612_090 Hb_001085_180--Hb_183612_090 Hb_001085_180--Hb_004968_070 Hb_000284_190 Hb_000284_190 Hb_001085_180--Hb_000284_190 Hb_061383_010 Hb_061383_010 Hb_001085_180--Hb_061383_010 Hb_032202_250 Hb_032202_250 Hb_001085_180--Hb_032202_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124826 0.113432 0 0.358186 0.118224 2.19765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595671 6.79206 0.69756 0.106082 0

CAGE analysis