Hb_033363_060

Information

Type transcription factor
Description TF Family: RAV
Location Contig33363: 53479-54576
Sequence    

Annotation

kegg
ID rcu:RCOM_0705620
description DNA-binding protein RAV1, putative
nr
ID XP_002524409.1
description DNA-binding protein RAV1, putative [Ricinus communis]
swissprot
ID Q9C6M5
description AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1
trembl
ID B9SEJ0
description DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0705620 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2 erf and b3 domain-containing transcription factor rav1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35012: 53404-54783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_060 0.0 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
2 Hb_007403_110 0.1928125306 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
3 Hb_001123_200 0.2032587004 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001377_360 0.2033857686 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
5 Hb_010519_040 0.2131801488 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
6 Hb_004712_170 0.2190726853 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
7 Hb_000179_240 0.2199774384 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
8 Hb_006909_060 0.2220389533 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
9 Hb_000925_030 0.2235524957 - - ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_020400_040 0.2252289457 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
11 Hb_002205_010 0.225672432 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
12 Hb_000056_170 0.22594226 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004724_220 0.228922645 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
14 Hb_004965_050 0.230036848 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
15 Hb_000210_010 0.231439561 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
16 Hb_003411_030 0.2339555309 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
17 Hb_002849_140 0.2342265656 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
18 Hb_171900_020 0.2344094414 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
19 Hb_000111_180 0.2347722036 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_004880_140 0.2351215581 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_033363_060 Hb_033363_060 Hb_007403_110 Hb_007403_110 Hb_033363_060--Hb_007403_110 Hb_001123_200 Hb_001123_200 Hb_033363_060--Hb_001123_200 Hb_001377_360 Hb_001377_360 Hb_033363_060--Hb_001377_360 Hb_010519_040 Hb_010519_040 Hb_033363_060--Hb_010519_040 Hb_004712_170 Hb_004712_170 Hb_033363_060--Hb_004712_170 Hb_000179_240 Hb_000179_240 Hb_033363_060--Hb_000179_240 Hb_007403_110--Hb_001377_360 Hb_000291_030 Hb_000291_030 Hb_007403_110--Hb_000291_030 Hb_008695_090 Hb_008695_090 Hb_007403_110--Hb_008695_090 Hb_002228_110 Hb_002228_110 Hb_007403_110--Hb_002228_110 Hb_000084_030 Hb_000084_030 Hb_007403_110--Hb_000084_030 Hb_004724_220 Hb_004724_220 Hb_007403_110--Hb_004724_220 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001123_200--Hb_001377_360 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300 Hb_001377_360--Hb_004724_220 Hb_001377_360--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_001377_360--Hb_001477_070 Hb_004635_030 Hb_004635_030 Hb_001377_360--Hb_004635_030 Hb_001377_360--Hb_002228_110 Hb_007943_050 Hb_007943_050 Hb_010519_040--Hb_007943_050 Hb_001221_220 Hb_001221_220 Hb_010519_040--Hb_001221_220 Hb_000210_010 Hb_000210_010 Hb_010519_040--Hb_000210_010 Hb_009545_090 Hb_009545_090 Hb_010519_040--Hb_009545_090 Hb_005867_090 Hb_005867_090 Hb_010519_040--Hb_005867_090 Hb_000342_060 Hb_000342_060 Hb_010519_040--Hb_000342_060 Hb_004712_170--Hb_007403_110 Hb_004204_050 Hb_004204_050 Hb_004712_170--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_004712_170--Hb_025214_090 Hb_004712_170--Hb_001377_360 Hb_002631_320 Hb_002631_320 Hb_004712_170--Hb_002631_320 Hb_004712_170--Hb_000179_240 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5347 126.712 82.9275 48.6199 37.2656 16.2741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4136 119.432 30.9098 3.57816 5.41178

CAGE analysis