Hb_015057_050

Information

Type -
Description -
Location Contig15057: 39752-42238
Sequence    

Annotation

kegg
ID rcu:RCOM_0651450
description D-alanine aminotransferase, putative (EC:2.6.1.21)
nr
ID XP_002523288.1
description D-alanine aminotransferase, putative [Ricinus communis]
swissprot
ID Q8L493
description D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana GN=DAAT PE=1 SV=1
trembl
ID B9SBB9
description D-alanine aminotransferase, putative OS=Ricinus communis GN=RCOM_0651450 PE=3 SV=1
Gene Ontology
ID GO:0047810
description d-amino-acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015057_050 0.0 - - D-alanine aminotransferase, putative [Ricinus communis]
2 Hb_000120_720 0.229483198 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_003845_020 0.2329641375 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_004129_050 0.2371123862 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
5 Hb_181110_010 0.237791933 - - auxin:hydrogen symporter, putative [Ricinus communis]
6 Hb_000317_160 0.2404123876 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
7 Hb_127886_010 0.2415623109 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_000320_300 0.2422204541 - - prephenate dehydratase, putative [Ricinus communis]
9 Hb_001140_360 0.2426827893 - - -
10 Hb_005725_230 0.2454931724 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
11 Hb_172112_020 0.2467011095 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
12 Hb_000120_390 0.246960345 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_006717_070 0.2470562245 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
14 Hb_002849_090 0.2491622476 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
15 Hb_001195_220 0.2504996589 - - sugar transporter, putative [Ricinus communis]
16 Hb_000008_090 0.2517285016 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_009732_020 0.2529292828 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
18 Hb_000174_140 0.2530022906 - - JHL23J11.8 [Jatropha curcas]
19 Hb_007185_040 0.2534268594 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
20 Hb_004976_050 0.2574198311 - - -

Gene co-expression network

sample Hb_015057_050 Hb_015057_050 Hb_000120_720 Hb_000120_720 Hb_015057_050--Hb_000120_720 Hb_003845_020 Hb_003845_020 Hb_015057_050--Hb_003845_020 Hb_004129_050 Hb_004129_050 Hb_015057_050--Hb_004129_050 Hb_181110_010 Hb_181110_010 Hb_015057_050--Hb_181110_010 Hb_000317_160 Hb_000317_160 Hb_015057_050--Hb_000317_160 Hb_127886_010 Hb_127886_010 Hb_015057_050--Hb_127886_010 Hb_000320_300 Hb_000320_300 Hb_000120_720--Hb_000320_300 Hb_001946_220 Hb_001946_220 Hb_000120_720--Hb_001946_220 Hb_172112_020 Hb_172112_020 Hb_000120_720--Hb_172112_020 Hb_003266_100 Hb_003266_100 Hb_000120_720--Hb_003266_100 Hb_007185_040 Hb_007185_040 Hb_000120_720--Hb_007185_040 Hb_001369_300 Hb_001369_300 Hb_000120_720--Hb_001369_300 Hb_003845_020--Hb_181110_010 Hb_000853_060 Hb_000853_060 Hb_003845_020--Hb_000853_060 Hb_000327_070 Hb_000327_070 Hb_003845_020--Hb_000327_070 Hb_002304_140 Hb_002304_140 Hb_003845_020--Hb_002304_140 Hb_000165_210 Hb_000165_210 Hb_003845_020--Hb_000165_210 Hb_003120_040 Hb_003120_040 Hb_003845_020--Hb_003120_040 Hb_000244_280 Hb_000244_280 Hb_004129_050--Hb_000244_280 Hb_000041_060 Hb_000041_060 Hb_004129_050--Hb_000041_060 Hb_009732_020 Hb_009732_020 Hb_004129_050--Hb_009732_020 Hb_006717_070 Hb_006717_070 Hb_004129_050--Hb_006717_070 Hb_003626_050 Hb_003626_050 Hb_004129_050--Hb_003626_050 Hb_012545_090 Hb_012545_090 Hb_004129_050--Hb_012545_090 Hb_181110_010--Hb_009732_020 Hb_001946_150 Hb_001946_150 Hb_181110_010--Hb_001946_150 Hb_002631_040 Hb_002631_040 Hb_181110_010--Hb_002631_040 Hb_181110_010--Hb_006717_070 Hb_000120_390 Hb_000120_390 Hb_181110_010--Hb_000120_390 Hb_005725_230 Hb_005725_230 Hb_000317_160--Hb_005725_230 Hb_002685_150 Hb_002685_150 Hb_000317_160--Hb_002685_150 Hb_000023_160 Hb_000023_160 Hb_000317_160--Hb_000023_160 Hb_002217_470 Hb_002217_470 Hb_000317_160--Hb_002217_470 Hb_004137_100 Hb_004137_100 Hb_000317_160--Hb_004137_100 Hb_027746_020 Hb_027746_020 Hb_000317_160--Hb_027746_020 Hb_127886_010--Hb_006717_070 Hb_000645_210 Hb_000645_210 Hb_127886_010--Hb_000645_210 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_000395_220 Hb_000395_220 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142544 0.617521 1.02425 0.296891 0.184944 0.235388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.434154 0.310471 0.346939 2.07612 0

CAGE analysis