Hb_010049_020

Information

Type -
Description -
Location Contig10049: 44287-47823
Sequence    

Annotation

kegg
ID mdm:103428610
description uncharacterized LOC103428610
nr
ID ABB47020.1
description retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
swissprot
ID P03556
description Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1
trembl
ID Q33AA6
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g13300 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010049_020 0.0 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
2 Hb_002387_080 0.3051191024 - - hypothetical protein JCGZ_25275 [Jatropha curcas]
3 Hb_001059_080 0.3119680776 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
4 Hb_000277_060 0.3182771801 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000152_510 0.3346771911 - - kinase, putative [Ricinus communis]
6 Hb_002876_160 0.337717889 - - sucrose transporter 1 [Hevea brasiliensis]
7 Hb_000069_230 0.3399117763 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
8 Hb_000062_010 0.3414159243 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
9 Hb_000483_040 0.3426470411 - - Cell division protein ftsH, putative [Ricinus communis]
10 Hb_002450_190 0.3457610253 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
11 Hb_000538_010 0.3459263983 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
12 Hb_003517_060 0.3485086225 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
13 Hb_000465_480 0.3494855689 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
14 Hb_018118_050 0.3521060272 - - hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
15 Hb_000904_130 0.3524753965 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_002026_060 0.3526707879 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
17 Hb_000009_580 0.3550614938 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
18 Hb_009372_010 0.356001209 - - -
19 Hb_003097_100 0.3561943258 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
20 Hb_002374_430 0.3596194063 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010049_020 Hb_010049_020 Hb_002387_080 Hb_002387_080 Hb_010049_020--Hb_002387_080 Hb_001059_080 Hb_001059_080 Hb_010049_020--Hb_001059_080 Hb_000277_060 Hb_000277_060 Hb_010049_020--Hb_000277_060 Hb_000152_510 Hb_000152_510 Hb_010049_020--Hb_000152_510 Hb_002876_160 Hb_002876_160 Hb_010049_020--Hb_002876_160 Hb_000069_230 Hb_000069_230 Hb_010049_020--Hb_000069_230 Hb_008246_090 Hb_008246_090 Hb_002387_080--Hb_008246_090 Hb_000483_040 Hb_000483_040 Hb_002387_080--Hb_000483_040 Hb_003494_060 Hb_003494_060 Hb_002387_080--Hb_003494_060 Hb_000179_240 Hb_000179_240 Hb_002387_080--Hb_000179_240 Hb_012725_040 Hb_012725_040 Hb_002387_080--Hb_012725_040 Hb_002387_080--Hb_000277_060 Hb_000538_010 Hb_000538_010 Hb_001059_080--Hb_000538_010 Hb_001059_080--Hb_000152_510 Hb_001307_010 Hb_001307_010 Hb_001059_080--Hb_001307_010 Hb_000390_220 Hb_000390_220 Hb_001059_080--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_001059_080--Hb_013394_060 Hb_000122_250 Hb_000122_250 Hb_001059_080--Hb_000122_250 Hb_000072_330 Hb_000072_330 Hb_000277_060--Hb_000072_330 Hb_020400_040 Hb_020400_040 Hb_000277_060--Hb_020400_040 Hb_000277_060--Hb_000179_240 Hb_002110_240 Hb_002110_240 Hb_000277_060--Hb_002110_240 Hb_000634_070 Hb_000634_070 Hb_000277_060--Hb_000634_070 Hb_000152_510--Hb_000538_010 Hb_000904_130 Hb_000904_130 Hb_000152_510--Hb_000904_130 Hb_004724_220 Hb_004724_220 Hb_000152_510--Hb_004724_220 Hb_007403_110 Hb_007403_110 Hb_000152_510--Hb_007403_110 Hb_031711_010 Hb_031711_010 Hb_000152_510--Hb_031711_010 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_005188_030 Hb_005188_030 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_000384_110 Hb_000384_110 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020 Hb_003097_100 Hb_003097_100 Hb_000069_230--Hb_003097_100 Hb_003078_050 Hb_003078_050 Hb_000069_230--Hb_003078_050 Hb_028207_040 Hb_028207_040 Hb_000069_230--Hb_028207_040 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_001525_010 Hb_001525_010 Hb_000069_230--Hb_001525_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0742431 0.0240953 0.00480508 0.036596 0.0225118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0146105 0 0.0439819 0.00912064 0

CAGE analysis