Hb_006978_020

Information

Type -
Description -
Location Contig6978: 14437-28079
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26270g
description POPTRDRAFT_654065; hypothetical protein
nr
ID XP_012078611.1
description PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID P82715
description PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3
trembl
ID B9H9F5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26270g PE=4 SV=2
Gene Ontology
ID GO:0009654
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54660: 16644-16812 , PASA_asmbl_54661: 16813-17011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006978_020 0.0 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002636_060 0.1743273662 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002759_070 0.1757945771 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
4 Hb_048476_140 0.1760897653 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
5 Hb_010381_040 0.1774085159 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_022693_110 0.1821786615 - - phosphate transporter [Manihot esculenta]
7 Hb_000300_100 0.1835936539 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
8 Hb_002486_020 0.1844054054 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000347_100 0.1846655303 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
10 Hb_001488_350 0.1850900212 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000032_610 0.1893024131 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
12 Hb_161396_010 0.1893362533 - - hypothetical protein F383_26394 [Gossypium arboreum]
13 Hb_011174_040 0.1894480788 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000120_940 0.1898219325 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
15 Hb_033312_080 0.1902372166 - - aldose-1-epimerase, putative [Ricinus communis]
16 Hb_000076_030 0.1915093694 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
17 Hb_000108_240 0.195550093 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
18 Hb_005839_090 0.1969350282 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
19 Hb_000689_050 0.198133613 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004650_030 0.1993163491 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006978_020 Hb_006978_020 Hb_002636_060 Hb_002636_060 Hb_006978_020--Hb_002636_060 Hb_002759_070 Hb_002759_070 Hb_006978_020--Hb_002759_070 Hb_048476_140 Hb_048476_140 Hb_006978_020--Hb_048476_140 Hb_010381_040 Hb_010381_040 Hb_006978_020--Hb_010381_040 Hb_022693_110 Hb_022693_110 Hb_006978_020--Hb_022693_110 Hb_000300_100 Hb_000300_100 Hb_006978_020--Hb_000300_100 Hb_001360_030 Hb_001360_030 Hb_002636_060--Hb_001360_030 Hb_021346_050 Hb_021346_050 Hb_002636_060--Hb_021346_050 Hb_000032_610 Hb_000032_610 Hb_002636_060--Hb_000032_610 Hb_005839_090 Hb_005839_090 Hb_002636_060--Hb_005839_090 Hb_000416_090 Hb_000416_090 Hb_002636_060--Hb_000416_090 Hb_002636_060--Hb_022693_110 Hb_002486_020 Hb_002486_020 Hb_002759_070--Hb_002486_020 Hb_000120_940 Hb_000120_940 Hb_002759_070--Hb_000120_940 Hb_000920_160 Hb_000920_160 Hb_002759_070--Hb_000920_160 Hb_161396_010 Hb_161396_010 Hb_002759_070--Hb_161396_010 Hb_000438_120 Hb_000438_120 Hb_002759_070--Hb_000438_120 Hb_001621_100 Hb_001621_100 Hb_002759_070--Hb_001621_100 Hb_000076_030 Hb_000076_030 Hb_048476_140--Hb_000076_030 Hb_001180_010 Hb_001180_010 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_042083_030 Hb_042083_030 Hb_048476_140--Hb_042083_030 Hb_048476_140--Hb_161396_010 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000200_330 Hb_000200_330 Hb_022693_110--Hb_000200_330 Hb_022693_110--Hb_000076_030 Hb_011174_040 Hb_011174_040 Hb_022693_110--Hb_011174_040 Hb_000689_050 Hb_000689_050 Hb_022693_110--Hb_000689_050 Hb_004994_330 Hb_004994_330 Hb_022693_110--Hb_004994_330 Hb_010534_020 Hb_010534_020 Hb_000300_100--Hb_010534_020 Hb_003398_040 Hb_003398_040 Hb_000300_100--Hb_003398_040 Hb_000300_100--Hb_010381_040 Hb_000310_060 Hb_000310_060 Hb_000300_100--Hb_000310_060 Hb_000310_120 Hb_000310_120 Hb_000300_100--Hb_000310_120 Hb_001587_040 Hb_001587_040 Hb_000300_100--Hb_001587_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121324 3.21286 3.35588 0 0.355971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.486771 0.459094 0.134303 1.59802 2.52707

CAGE analysis