Hb_006909_040

Information

Type -
Description -
Location Contig6909: 64067-64384
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_040 0.0 - - -
2 Hb_000086_040 0.3468066031 - - PREDICTED: legumin A-like [Jatropha curcas]
3 Hb_122556_010 0.3581263664 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_159036_010 0.3817601212 - - -
5 Hb_003333_010 0.3819854473 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
6 Hb_006113_010 0.3860805434 - - hypothetical protein VITISV_015014 [Vitis vinifera]
7 Hb_105028_010 0.3986052509 - - Retrotransposon protein, putative [Theobroma cacao]
8 Hb_001952_040 0.3995584704 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003523_040 0.4028923783 - - F15O4.13 [Arabidopsis thaliana]
10 Hb_000003_260 0.4069958266 - - -
11 Hb_094900_010 0.4079012565 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_000080_220 0.4131419752 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_001946_250 0.4172592351 - - PREDICTED: dnaJ homolog subfamily C member 18 [Orycteropus afer afer]
14 Hb_003335_070 0.4289527377 - - -
15 Hb_004117_350 0.4302082662 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
16 Hb_003780_070 0.4307608265 - - PREDICTED: pirin-like protein [Jatropha curcas]
17 Hb_123046_010 0.4321008741 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
18 Hb_006649_070 0.4328576129 - - unknown [Lotus japonicus]
19 Hb_133820_010 0.4379338053 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_012366_040 0.4415048903 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii]

Gene co-expression network

sample Hb_006909_040 Hb_006909_040 Hb_000086_040 Hb_000086_040 Hb_006909_040--Hb_000086_040 Hb_122556_010 Hb_122556_010 Hb_006909_040--Hb_122556_010 Hb_159036_010 Hb_159036_010 Hb_006909_040--Hb_159036_010 Hb_003333_010 Hb_003333_010 Hb_006909_040--Hb_003333_010 Hb_006113_010 Hb_006113_010 Hb_006909_040--Hb_006113_010 Hb_105028_010 Hb_105028_010 Hb_006909_040--Hb_105028_010 Hb_000003_260 Hb_000003_260 Hb_000086_040--Hb_000003_260 Hb_018202_030 Hb_018202_030 Hb_000086_040--Hb_018202_030 Hb_004117_350 Hb_004117_350 Hb_000086_040--Hb_004117_350 Hb_185447_010 Hb_185447_010 Hb_000086_040--Hb_185447_010 Hb_003435_010 Hb_003435_010 Hb_000086_040--Hb_003435_010 Hb_003780_070 Hb_003780_070 Hb_000086_040--Hb_003780_070 Hb_133820_010 Hb_133820_010 Hb_122556_010--Hb_133820_010 Hb_122556_010--Hb_159036_010 Hb_003523_040 Hb_003523_040 Hb_122556_010--Hb_003523_040 Hb_094900_010 Hb_094900_010 Hb_122556_010--Hb_094900_010 Hb_011484_010 Hb_011484_010 Hb_122556_010--Hb_011484_010 Hb_006132_030 Hb_006132_030 Hb_122556_010--Hb_006132_030 Hb_016482_010 Hb_016482_010 Hb_159036_010--Hb_016482_010 Hb_159036_010--Hb_094900_010 Hb_159036_010--Hb_133820_010 Hb_159036_010--Hb_003523_040 Hb_012572_020 Hb_012572_020 Hb_159036_010--Hb_012572_020 Hb_000080_220 Hb_000080_220 Hb_003333_010--Hb_000080_220 Hb_014497_120 Hb_014497_120 Hb_003333_010--Hb_014497_120 Hb_006154_020 Hb_006154_020 Hb_003333_010--Hb_006154_020 Hb_006775_030 Hb_006775_030 Hb_003333_010--Hb_006775_030 Hb_000708_040 Hb_000708_040 Hb_003333_010--Hb_000708_040 Hb_000331_460 Hb_000331_460 Hb_003333_010--Hb_000331_460 Hb_133047_020 Hb_133047_020 Hb_006113_010--Hb_133047_020 Hb_139576_010 Hb_139576_010 Hb_006113_010--Hb_139576_010 Hb_032531_010 Hb_032531_010 Hb_006113_010--Hb_032531_010 Hb_000101_150 Hb_000101_150 Hb_006113_010--Hb_000101_150 Hb_000940_190 Hb_000940_190 Hb_006113_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_006113_010--Hb_099723_010 Hb_105028_010--Hb_094900_010 Hb_105028_010--Hb_159036_010 Hb_169780_010 Hb_169780_010 Hb_105028_010--Hb_169780_010 Hb_000752_070 Hb_000752_070 Hb_105028_010--Hb_000752_070 Hb_001952_040 Hb_001952_040 Hb_105028_010--Hb_001952_040 Hb_105028_010--Hb_122556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.816818 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 0 0.373923 0.117081 0.407238

CAGE analysis