Hb_004453_010

Information

Type -
Description -
Location Contig4453: 705-1814
Sequence    

Annotation

kegg
ID rcu:RCOM_0924610
description hypothetical protein
nr
ID XP_002515544.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RP75
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004787_110 0.1938237378 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000261_260 0.1970758879 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
4 Hb_000270_300 0.2113744922 - - -
5 Hb_032202_120 0.2162973102 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
6 Hb_002346_010 0.2194130377 - - -
7 Hb_000844_070 0.2205209512 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
8 Hb_002170_040 0.2245607851 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002289_100 0.2250577915 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
10 Hb_000011_360 0.2256777403 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
11 Hb_010907_030 0.2257378637 - - -
12 Hb_005754_010 0.2266348109 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
13 Hb_000331_060 0.226771828 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
14 Hb_004032_430 0.2299938723 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
15 Hb_008103_070 0.2313933602 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
16 Hb_002585_040 0.2323419201 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
17 Hb_002374_220 0.2323716932 - - hypothetical protein CICLE_v10001597mg [Citrus clementina]
18 Hb_011224_060 0.2324376161 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
19 Hb_000010_250 0.2333673188 - - PREDICTED: protein tipD [Jatropha curcas]
20 Hb_000457_100 0.2336437055 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_004453_010 Hb_004453_010 Hb_004787_110 Hb_004787_110 Hb_004453_010--Hb_004787_110 Hb_000261_260 Hb_000261_260 Hb_004453_010--Hb_000261_260 Hb_000270_300 Hb_000270_300 Hb_004453_010--Hb_000270_300 Hb_032202_120 Hb_032202_120 Hb_004453_010--Hb_032202_120 Hb_002346_010 Hb_002346_010 Hb_004453_010--Hb_002346_010 Hb_000844_070 Hb_000844_070 Hb_004453_010--Hb_000844_070 Hb_004787_110--Hb_002346_010 Hb_007576_080 Hb_007576_080 Hb_004787_110--Hb_007576_080 Hb_034552_030 Hb_034552_030 Hb_004787_110--Hb_034552_030 Hb_002320_040 Hb_002320_040 Hb_004787_110--Hb_002320_040 Hb_000331_060 Hb_000331_060 Hb_004787_110--Hb_000331_060 Hb_002585_040 Hb_002585_040 Hb_004787_110--Hb_002585_040 Hb_012799_130 Hb_012799_130 Hb_000261_260--Hb_012799_130 Hb_002067_040 Hb_002067_040 Hb_000261_260--Hb_002067_040 Hb_002289_100 Hb_002289_100 Hb_000261_260--Hb_002289_100 Hb_003159_080 Hb_003159_080 Hb_000261_260--Hb_003159_080 Hb_005608_020 Hb_005608_020 Hb_000261_260--Hb_005608_020 Hb_000748_080 Hb_000748_080 Hb_000261_260--Hb_000748_080 Hb_036790_130 Hb_036790_130 Hb_000270_300--Hb_036790_130 Hb_002918_060 Hb_002918_060 Hb_000270_300--Hb_002918_060 Hb_000270_300--Hb_032202_120 Hb_004586_280 Hb_004586_280 Hb_000270_300--Hb_004586_280 Hb_171900_070 Hb_171900_070 Hb_000270_300--Hb_171900_070 Hb_000317_250 Hb_000317_250 Hb_000270_300--Hb_000317_250 Hb_008103_070 Hb_008103_070 Hb_032202_120--Hb_008103_070 Hb_001433_070 Hb_001433_070 Hb_032202_120--Hb_001433_070 Hb_005289_040 Hb_005289_040 Hb_032202_120--Hb_005289_040 Hb_012753_170 Hb_012753_170 Hb_032202_120--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_032202_120--Hb_002890_120 Hb_005588_090 Hb_005588_090 Hb_032202_120--Hb_005588_090 Hb_000457_100 Hb_000457_100 Hb_002346_010--Hb_000457_100 Hb_002346_010--Hb_007576_080 Hb_000676_260 Hb_000676_260 Hb_002346_010--Hb_000676_260 Hb_002346_010--Hb_002585_040 Hb_002346_010--Hb_002320_040 Hb_000011_360 Hb_000011_360 Hb_000844_070--Hb_000011_360 Hb_000844_070--Hb_005588_090 Hb_000120_430 Hb_000120_430 Hb_000844_070--Hb_000120_430 Hb_116349_070 Hb_116349_070 Hb_000844_070--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000844_070--Hb_001347_040 Hb_004209_020 Hb_004209_020 Hb_000844_070--Hb_004209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221946 0.243193 0.249957 0.135341 0.533214 0.338723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0967723 0.532796 0 0.458728 0.0780584

CAGE analysis