Hb_004129_030

Information

Type -
Description -
Location Contig4129: 24617-26671
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22600g
description POPTRDRAFT_559496; membrane family protein
nr
ID XP_011044767.1
description PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]
swissprot
ID O80854
description Cytochrome b561 domain-containing protein At2g30890 OS=Arabidopsis thaliana GN=At2g30890 PE=2 SV=1
trembl
ID B9H834
description Membrane family protein OS=Populus trichocarpa GN=POPTR_0005s22600g PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 domain-containing protein at2g30890-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_030 0.0 - - PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]
2 Hb_012807_010 0.2851677054 - - -
3 Hb_029580_010 0.2955338584 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
4 Hb_002983_060 0.297837808 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
5 Hb_007713_010 0.3035245866 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
6 Hb_003963_020 0.3139204914 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
7 Hb_092820_020 0.3244049656 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004374_060 0.3356363059 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
9 Hb_003209_030 0.3372159404 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
10 Hb_001959_300 0.3378196577 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
11 Hb_007477_090 0.3396934771 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
12 Hb_000723_310 0.3406888701 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004680_020 0.3448209138 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
14 Hb_004691_040 0.3464639124 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
15 Hb_001787_040 0.3488266259 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_005946_030 0.3490683284 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_007409_020 0.3561974214 - - -
18 Hb_005009_020 0.3592004711 - - -
19 Hb_000200_320 0.3622528609 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
20 Hb_116349_010 0.3627723651 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]

Gene co-expression network

sample Hb_004129_030 Hb_004129_030 Hb_012807_010 Hb_012807_010 Hb_004129_030--Hb_012807_010 Hb_029580_010 Hb_029580_010 Hb_004129_030--Hb_029580_010 Hb_002983_060 Hb_002983_060 Hb_004129_030--Hb_002983_060 Hb_007713_010 Hb_007713_010 Hb_004129_030--Hb_007713_010 Hb_003963_020 Hb_003963_020 Hb_004129_030--Hb_003963_020 Hb_092820_020 Hb_092820_020 Hb_004129_030--Hb_092820_020 Hb_001959_300 Hb_001959_300 Hb_012807_010--Hb_001959_300 Hb_005009_020 Hb_005009_020 Hb_012807_010--Hb_005009_020 Hb_012807_010--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_012807_010--Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_012807_010--Hb_000331_320 Hb_116349_010 Hb_116349_010 Hb_012807_010--Hb_116349_010 Hb_001792_080 Hb_001792_080 Hb_029580_010--Hb_001792_080 Hb_000723_310 Hb_000723_310 Hb_029580_010--Hb_000723_310 Hb_000096_060 Hb_000096_060 Hb_029580_010--Hb_000096_060 Hb_000243_010 Hb_000243_010 Hb_029580_010--Hb_000243_010 Hb_000777_060 Hb_000777_060 Hb_029580_010--Hb_000777_060 Hb_011310_060 Hb_011310_060 Hb_029580_010--Hb_011310_060 Hb_002983_060--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_002983_060--Hb_010422_080 Hb_092820_010 Hb_092820_010 Hb_002983_060--Hb_092820_010 Hb_008954_010 Hb_008954_010 Hb_002983_060--Hb_008954_010 Hb_004917_050 Hb_004917_050 Hb_002983_060--Hb_004917_050 Hb_000011_340 Hb_000011_340 Hb_002983_060--Hb_000011_340 Hb_003773_030 Hb_003773_030 Hb_007713_010--Hb_003773_030 Hb_007477_090 Hb_007477_090 Hb_007713_010--Hb_007477_090 Hb_029299_010 Hb_029299_010 Hb_007713_010--Hb_029299_010 Hb_039305_010 Hb_039305_010 Hb_007713_010--Hb_039305_010 Hb_022500_010 Hb_022500_010 Hb_007713_010--Hb_022500_010 Hb_000979_050 Hb_000979_050 Hb_007713_010--Hb_000979_050 Hb_000061_350 Hb_000061_350 Hb_003963_020--Hb_000061_350 Hb_003963_020--Hb_001959_300 Hb_000107_370 Hb_000107_370 Hb_003963_020--Hb_000107_370 Hb_048197_010 Hb_048197_010 Hb_003963_020--Hb_048197_010 Hb_004691_040 Hb_004691_040 Hb_003963_020--Hb_004691_040 Hb_003312_010 Hb_003312_010 Hb_003963_020--Hb_003312_010 Hb_000286_090 Hb_000286_090 Hb_092820_020--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_092820_020--Hb_001163_090 Hb_132998_010 Hb_132998_010 Hb_092820_020--Hb_132998_010 Hb_000753_190 Hb_000753_190 Hb_092820_020--Hb_000753_190 Hb_065866_010 Hb_065866_010 Hb_092820_020--Hb_065866_010 Hb_002896_080 Hb_002896_080 Hb_092820_020--Hb_002896_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.198134 0.0447188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116577 0.183203 0 0.0756039 0

CAGE analysis