Hb_029580_010

Information

Type -
Description -
Location Contig29580: 1435-1886
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012071372.1
description PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30910: 935-2518 , PASA_asmbl_30911: 765-2518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029580_010 0.0 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
2 Hb_001792_080 0.1899251987 - - unknown [Populus trichocarpa]
3 Hb_000723_310 0.1913554808 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000096_060 0.2071158699 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000243_010 0.2252560558 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
6 Hb_000777_060 0.2356934221 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011310_060 0.2411715846 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
8 Hb_000003_350 0.2428973605 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
9 Hb_021888_130 0.2441005997 - - -
10 Hb_004680_020 0.245637149 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
11 Hb_000369_090 0.2460094448 - - -
12 Hb_098315_120 0.2489045063 - - -
13 Hb_002293_030 0.2549836793 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
14 Hb_000563_530 0.2550671178 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
15 Hb_007477_090 0.2551222199 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
16 Hb_001080_220 0.25614244 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
17 Hb_003687_020 0.2582064615 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
18 Hb_171900_050 0.2582607845 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001008_010 0.2615047292 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
20 Hb_033448_010 0.2618541261 - - hypothetical protein JCGZ_19772 [Jatropha curcas]

Gene co-expression network

sample Hb_029580_010 Hb_029580_010 Hb_001792_080 Hb_001792_080 Hb_029580_010--Hb_001792_080 Hb_000723_310 Hb_000723_310 Hb_029580_010--Hb_000723_310 Hb_000096_060 Hb_000096_060 Hb_029580_010--Hb_000096_060 Hb_000243_010 Hb_000243_010 Hb_029580_010--Hb_000243_010 Hb_000777_060 Hb_000777_060 Hb_029580_010--Hb_000777_060 Hb_011310_060 Hb_011310_060 Hb_029580_010--Hb_011310_060 Hb_000369_090 Hb_000369_090 Hb_001792_080--Hb_000369_090 Hb_008557_020 Hb_008557_020 Hb_001792_080--Hb_008557_020 Hb_000603_220 Hb_000603_220 Hb_001792_080--Hb_000603_220 Hb_002890_260 Hb_002890_260 Hb_001792_080--Hb_002890_260 Hb_000003_350 Hb_000003_350 Hb_001792_080--Hb_000003_350 Hb_001221_380 Hb_001221_380 Hb_000723_310--Hb_001221_380 Hb_007477_090 Hb_007477_090 Hb_000723_310--Hb_007477_090 Hb_000723_310--Hb_011310_060 Hb_000723_310--Hb_000777_060 Hb_000723_310--Hb_008557_020 Hb_000096_060--Hb_011310_060 Hb_003549_020 Hb_003549_020 Hb_000096_060--Hb_003549_020 Hb_000645_190 Hb_000645_190 Hb_000096_060--Hb_000645_190 Hb_000364_210 Hb_000364_210 Hb_000096_060--Hb_000364_210 Hb_000184_220 Hb_000184_220 Hb_000096_060--Hb_000184_220 Hb_001769_100 Hb_001769_100 Hb_000096_060--Hb_001769_100 Hb_000175_400 Hb_000175_400 Hb_000243_010--Hb_000175_400 Hb_025193_050 Hb_025193_050 Hb_000243_010--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_000243_010--Hb_000152_430 Hb_000243_010--Hb_000003_350 Hb_000608_420 Hb_000608_420 Hb_000243_010--Hb_000608_420 Hb_000318_380 Hb_000318_380 Hb_000243_010--Hb_000318_380 Hb_000061_160 Hb_000061_160 Hb_000777_060--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_000777_060--Hb_001621_180 Hb_000330_170 Hb_000330_170 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_007441_180 Hb_007441_180 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_002293_030 Hb_002293_030 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.489823 0.123826 0 0.821737 12.5208 12.2237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5184 20.9867 3.21738 4.62953 2.10979

CAGE analysis