Hb_001792_080

Information

Type -
Description -
Location Contig1792: 130388-137776
Sequence    

Annotation

kegg
ID rcu:RCOM_0364210
description signalosome subunit, putative
nr
ID ABK95254.1
description unknown [Populus trichocarpa]
swissprot
ID Q8W206
description COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2
trembl
ID A9PFV1
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001792_080 0.0 - - unknown [Populus trichocarpa]
2 Hb_000369_090 0.1708154665 - - -
3 Hb_029580_010 0.1899251987 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
4 Hb_008557_020 0.1982318379 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
5 Hb_000603_220 0.2034869623 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
6 Hb_002890_260 0.2056465194 - - -
7 Hb_000003_350 0.2097596029 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
8 Hb_000243_010 0.2102009438 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
9 Hb_004410_010 0.2122852859 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
10 Hb_000563_530 0.2136266904 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
11 Hb_033448_010 0.2154639198 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
12 Hb_001008_010 0.2162687711 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
13 Hb_007317_220 0.2188261548 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
14 Hb_005348_080 0.2199191258 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
15 Hb_000777_060 0.2200949302 - - conserved hypothetical protein [Ricinus communis]
16 Hb_023675_010 0.2221803068 - - -
17 Hb_000479_180 0.2232710735 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000723_310 0.2238309584 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004680_020 0.2244442875 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
20 Hb_001279_250 0.2247505264 - - PREDICTED: pectate lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001792_080 Hb_001792_080 Hb_000369_090 Hb_000369_090 Hb_001792_080--Hb_000369_090 Hb_029580_010 Hb_029580_010 Hb_001792_080--Hb_029580_010 Hb_008557_020 Hb_008557_020 Hb_001792_080--Hb_008557_020 Hb_000603_220 Hb_000603_220 Hb_001792_080--Hb_000603_220 Hb_002890_260 Hb_002890_260 Hb_001792_080--Hb_002890_260 Hb_000003_350 Hb_000003_350 Hb_001792_080--Hb_000003_350 Hb_033448_010 Hb_033448_010 Hb_000369_090--Hb_033448_010 Hb_000563_530 Hb_000563_530 Hb_000369_090--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_000369_090--Hb_002200_120 Hb_000330_170 Hb_000330_170 Hb_000369_090--Hb_000330_170 Hb_000184_120 Hb_000184_120 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_000723_310 Hb_000723_310 Hb_029580_010--Hb_000723_310 Hb_000096_060 Hb_000096_060 Hb_029580_010--Hb_000096_060 Hb_000243_010 Hb_000243_010 Hb_029580_010--Hb_000243_010 Hb_000777_060 Hb_000777_060 Hb_029580_010--Hb_000777_060 Hb_011310_060 Hb_011310_060 Hb_029580_010--Hb_011310_060 Hb_001279_250 Hb_001279_250 Hb_008557_020--Hb_001279_250 Hb_001621_180 Hb_001621_180 Hb_008557_020--Hb_001621_180 Hb_001266_050 Hb_001266_050 Hb_008557_020--Hb_001266_050 Hb_150299_030 Hb_150299_030 Hb_008557_020--Hb_150299_030 Hb_001252_140 Hb_001252_140 Hb_008557_020--Hb_001252_140 Hb_000052_010 Hb_000052_010 Hb_008557_020--Hb_000052_010 Hb_000603_220--Hb_000330_170 Hb_007317_220 Hb_007317_220 Hb_000603_220--Hb_007317_220 Hb_005063_010 Hb_005063_010 Hb_000603_220--Hb_005063_010 Hb_000603_220--Hb_033448_010 Hb_000603_220--Hb_002200_120 Hb_000603_220--Hb_000369_090 Hb_002890_260--Hb_000369_090 Hb_002890_260--Hb_000603_220 Hb_004025_030 Hb_004025_030 Hb_002890_260--Hb_004025_030 Hb_002890_260--Hb_000184_120 Hb_043061_010 Hb_043061_010 Hb_002890_260--Hb_043061_010 Hb_002890_260--Hb_033448_010 Hb_000003_350--Hb_000243_010 Hb_002259_150 Hb_002259_150 Hb_000003_350--Hb_002259_150 Hb_001629_100 Hb_001629_100 Hb_000003_350--Hb_001629_100 Hb_000175_400 Hb_000175_400 Hb_000003_350--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_000003_350--Hb_000193_350 Hb_001057_050 Hb_001057_050 Hb_000003_350--Hb_001057_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40919 0 0 0 6.23969 9.90519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5811 10.5331 3.31002 1.50742 1.11813

CAGE analysis