Hb_003750_060

Information

Type -
Description -
Location Contig3750: 28733-39941
Sequence    

Annotation

kegg
ID rcu:RCOM_0371600
description hypothetical protein
nr
ID XP_012077827.1
description PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
swissprot
ID Q8GT66
description Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1
trembl
ID B9T0Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0371600 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38284: 33594-39913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_060 0.0 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
2 Hb_002027_060 0.1066264201 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
3 Hb_000236_470 0.1124039621 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
4 Hb_002701_150 0.1142926497 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
5 Hb_005333_160 0.1144124369 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
6 Hb_003943_020 0.1238529634 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
7 Hb_002890_120 0.1239191944 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
8 Hb_033554_020 0.127609023 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
9 Hb_000523_080 0.1306744243 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
10 Hb_009449_090 0.1310618452 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
11 Hb_001047_200 0.1323127634 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
12 Hb_001636_050 0.1345675105 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
13 Hb_001638_090 0.1348598561 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
14 Hb_003780_090 0.135034857 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
15 Hb_120803_010 0.1351215902 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
16 Hb_000640_310 0.1366774571 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
17 Hb_002067_030 0.1369341665 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
18 Hb_002571_030 0.1379078746 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
19 Hb_000098_140 0.1384591802 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
20 Hb_000648_080 0.138476492 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003750_060 Hb_003750_060 Hb_002027_060 Hb_002027_060 Hb_003750_060--Hb_002027_060 Hb_000236_470 Hb_000236_470 Hb_003750_060--Hb_000236_470 Hb_002701_150 Hb_002701_150 Hb_003750_060--Hb_002701_150 Hb_005333_160 Hb_005333_160 Hb_003750_060--Hb_005333_160 Hb_003943_020 Hb_003943_020 Hb_003750_060--Hb_003943_020 Hb_002890_120 Hb_002890_120 Hb_003750_060--Hb_002890_120 Hb_132840_010 Hb_132840_010 Hb_002027_060--Hb_132840_010 Hb_002027_060--Hb_002701_150 Hb_001821_160 Hb_001821_160 Hb_002027_060--Hb_001821_160 Hb_001636_050 Hb_001636_050 Hb_002027_060--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_002027_060--Hb_013394_030 Hb_000402_120 Hb_000402_120 Hb_002027_060--Hb_000402_120 Hb_001277_020 Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_171900_070 Hb_171900_070 Hb_005333_160--Hb_171900_070 Hb_005333_160--Hb_003943_020 Hb_000086_560 Hb_000086_560 Hb_005333_160--Hb_000086_560 Hb_000359_120 Hb_000359_120 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_003943_020--Hb_000523_080 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_128548_010 Hb_128548_010 Hb_003943_020--Hb_128548_010 Hb_013358_070 Hb_013358_070 Hb_003943_020--Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_003943_020--Hb_001723_140 Hb_000648_080 Hb_000648_080 Hb_002890_120--Hb_000648_080 Hb_008103_070 Hb_008103_070 Hb_002890_120--Hb_008103_070 Hb_000236_400 Hb_000236_400 Hb_002890_120--Hb_000236_400 Hb_032202_120 Hb_032202_120 Hb_002890_120--Hb_032202_120 Hb_000398_020 Hb_000398_020 Hb_002890_120--Hb_000398_020 Hb_000710_040 Hb_000710_040 Hb_002890_120--Hb_000710_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86134 2.62242 2.83686 0.664836 3.2912 1.56445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.73476 1.40377 0.412058 2.79467 1.71998

CAGE analysis