Hb_003676_030

Information

Type -
Description -
Location Contig3676: 91675-95427
Sequence    

Annotation

kegg
ID rcu:RCOM_0714000
description Cyclin-L2, putative
nr
ID XP_011031796.1
description PREDICTED: cyclin-L1-1-like [Populus euphratica]
swissprot
ID Q8RWV3
description Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2
trembl
ID A0A067KJV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14762 PE=3 SV=1
Gene Ontology
ID GO:0009506
description cyclin-l1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37784: 91679-95308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003676_030 0.0 - - PREDICTED: cyclin-L1-1-like [Populus euphratica]
2 Hb_001864_070 0.1709551633 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
3 Hb_002893_040 0.1816741433 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
4 Hb_000136_030 0.1846026011 - - serine/arginine rich splicing factor, putative [Ricinus communis]
5 Hb_001839_020 0.1847358076 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_005389_100 0.1856630948 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
7 Hb_004648_090 0.1863730796 - - peroxisomal biogenesis factor, putative [Ricinus communis]
8 Hb_001898_240 0.1886414949 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
9 Hb_005928_040 0.1911742867 - - phosphoinositide phosphatase family protein [Populus trichocarpa]
10 Hb_003861_070 0.1955217059 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
11 Hb_000152_230 0.1962190714 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
12 Hb_002553_040 0.1975368803 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
13 Hb_002228_110 0.1988358397 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
14 Hb_006261_090 0.1999547267 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
15 Hb_001951_200 0.2014914168 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_006570_150 0.2017644826 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
17 Hb_001328_030 0.201884136 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
18 Hb_002248_030 0.2041342965 - - metallothionein-like protein [Hevea brasiliensis]
19 Hb_001671_040 0.2051843481 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
20 Hb_000163_240 0.2057476173 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003676_030 Hb_003676_030 Hb_001864_070 Hb_001864_070 Hb_003676_030--Hb_001864_070 Hb_002893_040 Hb_002893_040 Hb_003676_030--Hb_002893_040 Hb_000136_030 Hb_000136_030 Hb_003676_030--Hb_000136_030 Hb_001839_020 Hb_001839_020 Hb_003676_030--Hb_001839_020 Hb_005389_100 Hb_005389_100 Hb_003676_030--Hb_005389_100 Hb_004648_090 Hb_004648_090 Hb_003676_030--Hb_004648_090 Hb_001898_240 Hb_001898_240 Hb_001864_070--Hb_001898_240 Hb_002217_110 Hb_002217_110 Hb_001864_070--Hb_002217_110 Hb_001699_210 Hb_001699_210 Hb_001864_070--Hb_001699_210 Hb_002553_040 Hb_002553_040 Hb_001864_070--Hb_002553_040 Hb_008225_090 Hb_008225_090 Hb_001864_070--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001864_070--Hb_000010_110 Hb_001258_100 Hb_001258_100 Hb_002893_040--Hb_001258_100 Hb_002413_010 Hb_002413_010 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002572_020 Hb_002572_020 Hb_002893_040--Hb_002572_020 Hb_002942_210 Hb_002942_210 Hb_000136_030--Hb_002942_210 Hb_139002_010 Hb_139002_010 Hb_000136_030--Hb_139002_010 Hb_000136_030--Hb_001839_020 Hb_002042_030 Hb_002042_030 Hb_000136_030--Hb_002042_030 Hb_002814_110 Hb_002814_110 Hb_000136_030--Hb_002814_110 Hb_005288_080 Hb_005288_080 Hb_000136_030--Hb_005288_080 Hb_015292_040 Hb_015292_040 Hb_001839_020--Hb_015292_040 Hb_000663_020 Hb_000663_020 Hb_001839_020--Hb_000663_020 Hb_001322_020 Hb_001322_020 Hb_001839_020--Hb_001322_020 Hb_077026_010 Hb_077026_010 Hb_001839_020--Hb_077026_010 Hb_005731_110 Hb_005731_110 Hb_001839_020--Hb_005731_110 Hb_000329_590 Hb_000329_590 Hb_005389_100--Hb_000329_590 Hb_005389_100--Hb_004648_090 Hb_000098_140 Hb_000098_140 Hb_005389_100--Hb_000098_140 Hb_002067_030 Hb_002067_030 Hb_005389_100--Hb_002067_030 Hb_001671_040 Hb_001671_040 Hb_005389_100--Hb_001671_040 Hb_000525_100 Hb_000525_100 Hb_005389_100--Hb_000525_100 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_002228_110 Hb_002228_110 Hb_004648_090--Hb_002228_110 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_004648_090--Hb_001671_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9191 29.7172 32.4425 19.4898 28.64 6.18076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.549 27.3686 1.24534 2.58948 19.7435

CAGE analysis