Hb_003581_250

Information

Type -
Description -
Location Contig3581: 199467-201254
Sequence    

Annotation

kegg
ID rcu:RCOM_0697640
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091918.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
swissprot
ID Q9SIT7
description Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
trembl
ID A0A067JNZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21685 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g33170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36969: 200493-200635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_250 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
2 Hb_004884_150 0.0845412626 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
3 Hb_000174_060 0.0857718295 - - zinc finger family protein [Populus trichocarpa]
4 Hb_002701_150 0.0865092598 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
5 Hb_002876_130 0.0889618122 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
6 Hb_140049_040 0.0890163508 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
7 Hb_007426_060 0.0891758879 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
8 Hb_000236_470 0.0922622983 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
9 Hb_000012_260 0.0934193384 - - Far upstream element-binding 2 [Gossypium arboreum]
10 Hb_003058_060 0.0934898467 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
11 Hb_000648_080 0.0957735802 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
12 Hb_000862_040 0.09608779 - - ara4-interacting protein, putative [Ricinus communis]
13 Hb_023226_080 0.0963334412 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
14 Hb_000453_060 0.0969782222 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
15 Hb_000261_240 0.0980437169 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
16 Hb_012565_050 0.0986662544 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
17 Hb_000960_050 0.0989705372 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_000556_170 0.0990948267 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
19 Hb_001277_020 0.1001450007 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
20 Hb_000406_230 0.1014147728 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_250 Hb_003581_250 Hb_004884_150 Hb_004884_150 Hb_003581_250--Hb_004884_150 Hb_000174_060 Hb_000174_060 Hb_003581_250--Hb_000174_060 Hb_002701_150 Hb_002701_150 Hb_003581_250--Hb_002701_150 Hb_002876_130 Hb_002876_130 Hb_003581_250--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_003581_250--Hb_140049_040 Hb_007426_060 Hb_007426_060 Hb_003581_250--Hb_007426_060 Hb_009615_170 Hb_009615_170 Hb_004884_150--Hb_009615_170 Hb_003284_030 Hb_003284_030 Hb_004884_150--Hb_003284_030 Hb_004884_150--Hb_000174_060 Hb_005357_260 Hb_005357_260 Hb_004884_150--Hb_005357_260 Hb_000025_320 Hb_000025_320 Hb_004884_150--Hb_000025_320 Hb_023226_080 Hb_023226_080 Hb_004884_150--Hb_023226_080 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_000174_060--Hb_009615_170 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_000836_410 Hb_000836_410 Hb_002701_150--Hb_000836_410 Hb_001636_050 Hb_001636_050 Hb_002701_150--Hb_001636_050 Hb_000679_340 Hb_000679_340 Hb_002701_150--Hb_000679_340 Hb_000230_090 Hb_000230_090 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_000289_040 Hb_000289_040 Hb_002876_130--Hb_000289_040 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_002876_130--Hb_140049_040 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_140049_040--Hb_000289_040 Hb_140049_040--Hb_001767_140 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_001534_210 Hb_001534_210 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638548 1.29032 0.866245 0.544425 0.984465 1.06891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281333 0.704298 0.494469 1.02591 0.508523

CAGE analysis