Hb_003549_170

Information

Type -
Description -
Location Contig3549: 132812-142374
Sequence    

Annotation

kegg
ID rcu:RCOM_1435770
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012088856.1
description PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
swissprot
ID Q9SA52
description Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
trembl
ID A0A067JHM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1
Gene Ontology
ID GO:0009526
description chloroplast stem-loop binding protein of 41 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36783: 131829-132218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_170 0.0 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
2 Hb_010584_020 0.1205568725 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_021443_060 0.1232578469 - - PTH-1 family protein [Populus trichocarpa]
4 Hb_003937_010 0.1238037454 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
5 Hb_033363_040 0.1269548691 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
6 Hb_000962_090 0.1295714804 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
7 Hb_005527_070 0.1310921983 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
8 Hb_004994_030 0.1324718387 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
9 Hb_000155_020 0.1336444565 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002007_220 0.1362124175 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_005211_080 0.1362456963 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
12 Hb_003643_050 0.1372133909 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
13 Hb_001159_050 0.1384950007 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
14 Hb_000270_090 0.1386158176 - - nitrate transporter, putative [Ricinus communis]
15 Hb_001014_240 0.139354144 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
16 Hb_006618_110 0.1396705675 - - -
17 Hb_001321_010 0.1402016982 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
18 Hb_001148_110 0.1405211798 - - -
19 Hb_011013_040 0.1411350621 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
20 Hb_000359_050 0.141982606 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003549_170 Hb_003549_170 Hb_010584_020 Hb_010584_020 Hb_003549_170--Hb_010584_020 Hb_021443_060 Hb_021443_060 Hb_003549_170--Hb_021443_060 Hb_003937_010 Hb_003937_010 Hb_003549_170--Hb_003937_010 Hb_033363_040 Hb_033363_040 Hb_003549_170--Hb_033363_040 Hb_000962_090 Hb_000962_090 Hb_003549_170--Hb_000962_090 Hb_005527_070 Hb_005527_070 Hb_003549_170--Hb_005527_070 Hb_000486_020 Hb_000486_020 Hb_010584_020--Hb_000486_020 Hb_010584_020--Hb_003937_010 Hb_006618_110 Hb_006618_110 Hb_010584_020--Hb_006618_110 Hb_010534_040 Hb_010534_040 Hb_010584_020--Hb_010534_040 Hb_000155_020 Hb_000155_020 Hb_010584_020--Hb_000155_020 Hb_001051_010 Hb_001051_010 Hb_010584_020--Hb_001051_010 Hb_092516_010 Hb_092516_010 Hb_021443_060--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_021443_060--Hb_000313_250 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_027684_010 Hb_027684_010 Hb_021443_060--Hb_027684_010 Hb_000358_160 Hb_000358_160 Hb_021443_060--Hb_000358_160 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_003937_010--Hb_006618_110 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_063405_010 Hb_063405_010 Hb_003937_010--Hb_063405_010 Hb_003937_010--Hb_000155_020 Hb_001014_240 Hb_001014_240 Hb_003937_010--Hb_001014_240 Hb_003777_090 Hb_003777_090 Hb_003937_010--Hb_003777_090 Hb_018591_020 Hb_018591_020 Hb_033363_040--Hb_018591_020 Hb_002007_220 Hb_002007_220 Hb_033363_040--Hb_002007_220 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_033363_040--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_033363_040--Hb_003494_090 Hb_005211_080 Hb_005211_080 Hb_000962_090--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_001338_120 Hb_001338_120 Hb_005527_070--Hb_001338_120 Hb_004306_090 Hb_004306_090 Hb_005527_070--Hb_004306_090 Hb_005527_070--Hb_005211_080 Hb_000544_070 Hb_000544_070 Hb_005527_070--Hb_000544_070 Hb_005527_070--Hb_005329_010 Hb_005527_070--Hb_001006_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0551528 0.422792 0.15543 0.0322218 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0238769 0.4335

CAGE analysis