Hb_005527_070

Information

Type -
Description -
Location Contig5527: 49209-51232
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15840g
description POPTRDRAFT_644424; short-chain dehydrogenase/reductase family protein
nr
ID XP_002301348.1
description short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID B9GPY4
description Short-chain dehydrogenase/reductase family protein OS=Populus trichocarpa GN=POPTR_0002s15840g PE=3 SV=1
Gene Ontology
ID GO:0016491
description (+)-neomenthol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48323: 49180-51216 , PASA_asmbl_48324: 49310-51028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_070 0.0 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
2 Hb_001338_120 0.0803839213 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
3 Hb_004306_090 0.0816937972 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
4 Hb_005211_080 0.0933900732 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
5 Hb_000544_070 0.0955756952 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
6 Hb_005329_010 0.0959144611 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
7 Hb_001006_150 0.097923659 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_000359_050 0.1015295076 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
9 Hb_000962_090 0.1017250025 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
10 Hb_000445_270 0.1031974377 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003373_050 0.1082229018 - - receptor protein kinase zmpk1, putative [Ricinus communis]
12 Hb_001864_050 0.1084698722 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
13 Hb_000482_160 0.1106565764 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
14 Hb_005433_020 0.1138077969 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
15 Hb_005015_100 0.1158787312 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
16 Hb_001766_160 0.1161842959 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
17 Hb_000340_280 0.1170034545 - - conserved hypothetical protein [Ricinus communis]
18 Hb_080922_010 0.1181302888 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_101133_030 0.1190956153 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
20 Hb_002609_140 0.1191799894 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005527_070 Hb_005527_070 Hb_001338_120 Hb_001338_120 Hb_005527_070--Hb_001338_120 Hb_004306_090 Hb_004306_090 Hb_005527_070--Hb_004306_090 Hb_005211_080 Hb_005211_080 Hb_005527_070--Hb_005211_080 Hb_000544_070 Hb_000544_070 Hb_005527_070--Hb_000544_070 Hb_005329_010 Hb_005329_010 Hb_005527_070--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_005527_070--Hb_001006_150 Hb_001864_050 Hb_001864_050 Hb_001338_120--Hb_001864_050 Hb_001338_120--Hb_001006_150 Hb_001338_120--Hb_005329_010 Hb_000359_050 Hb_000359_050 Hb_001338_120--Hb_000359_050 Hb_000281_120 Hb_000281_120 Hb_001338_120--Hb_000281_120 Hb_000445_270 Hb_000445_270 Hb_001338_120--Hb_000445_270 Hb_004306_090--Hb_005211_080 Hb_004306_090--Hb_005329_010 Hb_004306_090--Hb_000544_070 Hb_000460_040 Hb_000460_040 Hb_004306_090--Hb_000460_040 Hb_004306_090--Hb_001006_150 Hb_005433_020 Hb_005433_020 Hb_004306_090--Hb_005433_020 Hb_000962_090 Hb_000962_090 Hb_005211_080--Hb_000962_090 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_005211_080--Hb_005329_010 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_005329_010--Hb_000460_040 Hb_001006_150--Hb_000359_050 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0680498 4.47382 39.9914 9.091 0.784559 1.01933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.040874 0.0751326 0.888056 42.7495

CAGE analysis