Hb_003125_080

Information

Type -
Description -
Location Contig3125: 47105-48404
Sequence    

Annotation

kegg
ID rcu:RCOM_1506210
description hypothetical protein
nr
ID XP_012079835.1
description PREDICTED: F-box protein At5g50450 [Jatropha curcas]
swissprot
ID Q9FYF9
description F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1
trembl
ID A0A067K3V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33048: 47098-48415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_080 0.0 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
2 Hb_010904_010 0.1314691782 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
3 Hb_003970_010 0.1406839798 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
4 Hb_000926_070 0.1426041272 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006478_050 0.1491533247 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_005486_020 0.1494776032 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
7 Hb_029095_010 0.1521093727 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
8 Hb_000340_380 0.1539485193 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
9 Hb_002999_130 0.1545754098 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
10 Hb_005999_020 0.1548130892 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
11 Hb_000594_150 0.1549437146 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
12 Hb_000990_040 0.1550703671 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
13 Hb_002211_020 0.1572302813 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
14 Hb_002596_090 0.157354045 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
15 Hb_008202_010 0.1589668823 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002030_090 0.1589992234 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_001352_030 0.1590854057 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
18 Hb_003337_020 0.1600273914 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
19 Hb_000260_410 0.1626644275 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
20 Hb_093364_010 0.1627192954 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_080 Hb_003125_080 Hb_010904_010 Hb_010904_010 Hb_003125_080--Hb_010904_010 Hb_003970_010 Hb_003970_010 Hb_003125_080--Hb_003970_010 Hb_000926_070 Hb_000926_070 Hb_003125_080--Hb_000926_070 Hb_006478_050 Hb_006478_050 Hb_003125_080--Hb_006478_050 Hb_005486_020 Hb_005486_020 Hb_003125_080--Hb_005486_020 Hb_029095_010 Hb_029095_010 Hb_003125_080--Hb_029095_010 Hb_010904_010--Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_010904_010--Hb_002211_020 Hb_000732_160 Hb_000732_160 Hb_010904_010--Hb_000732_160 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_008202_010 Hb_008202_010 Hb_010904_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_010904_010--Hb_000110_040 Hb_003970_010--Hb_002211_020 Hb_000031_320 Hb_000031_320 Hb_003970_010--Hb_000031_320 Hb_003970_010--Hb_008202_010 Hb_003970_010--Hb_000110_040 Hb_046739_010 Hb_046739_010 Hb_003970_010--Hb_046739_010 Hb_006277_080 Hb_006277_080 Hb_000926_070--Hb_006277_080 Hb_000926_070--Hb_006478_050 Hb_000917_200 Hb_000917_200 Hb_000926_070--Hb_000917_200 Hb_000103_230 Hb_000103_230 Hb_000926_070--Hb_000103_230 Hb_037711_010 Hb_037711_010 Hb_000926_070--Hb_037711_010 Hb_019863_050 Hb_019863_050 Hb_000926_070--Hb_019863_050 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000922_160 Hb_000922_160 Hb_006478_050--Hb_000922_160 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_002890_160 Hb_002890_160 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_005486_020--Hb_029095_010 Hb_005486_020--Hb_001352_030 Hb_002596_090 Hb_002596_090 Hb_005486_020--Hb_002596_090 Hb_093364_010 Hb_093364_010 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_029095_010--Hb_093364_010 Hb_029095_010--Hb_000990_040 Hb_029095_010--Hb_002596_090 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_004611_050 Hb_004611_050 Hb_029095_010--Hb_004611_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.806082 1.20339 0.413091 0.0755198 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0362478 0 0.174614 1.11815

CAGE analysis