Hb_002007_020

Information

Type -
Description -
Location Contig2007: 8998-15843
Sequence    

Annotation

kegg
ID rcu:RCOM_1433100
description DNA helicase, putative
nr
ID XP_012089021.1
description PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
swissprot
ID Q9FT69
description ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana GN=RECQSIM PE=2 SV=1
trembl
ID A0A0D2PGX0
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G299200 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase q-like sim isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20349: 9347-9508 , PASA_asmbl_20350: 10191-10780 , PASA_asmbl_20352: 11734-12646 , PASA_asmbl_20353: 14634-15576 , PASA_asmbl_20354: 15666-15781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_020 0.0 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
2 Hb_000264_030 0.0746953798 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
3 Hb_011537_050 0.0795241883 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
4 Hb_001799_050 0.0796750623 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
5 Hb_000023_330 0.0822954283 - - RNA recognition motif-containing family protein [Populus trichocarpa]
6 Hb_183612_040 0.0833397324 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
7 Hb_002374_010 0.0844437718 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
8 Hb_002864_010 0.0908172147 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
9 Hb_000025_410 0.095733282 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
10 Hb_001486_160 0.0991476567 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_001946_340 0.1006435212 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
12 Hb_164544_010 0.1016138503 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
13 Hb_000640_310 0.1017424269 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
14 Hb_006355_010 0.1021112726 - - PREDICTED: protein NLRC3 [Jatropha curcas]
15 Hb_027760_080 0.1021347718 - - cytochrome P450, putative [Ricinus communis]
16 Hb_005332_020 0.1026183895 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000579_230 0.1031295166 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
18 Hb_023344_010 0.1031429721 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
19 Hb_007054_060 0.1036144386 - - -
20 Hb_104061_020 0.1037720435 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002007_020 Hb_002007_020 Hb_000264_030 Hb_000264_030 Hb_002007_020--Hb_000264_030 Hb_011537_050 Hb_011537_050 Hb_002007_020--Hb_011537_050 Hb_001799_050 Hb_001799_050 Hb_002007_020--Hb_001799_050 Hb_000023_330 Hb_000023_330 Hb_002007_020--Hb_000023_330 Hb_183612_040 Hb_183612_040 Hb_002007_020--Hb_183612_040 Hb_002374_010 Hb_002374_010 Hb_002007_020--Hb_002374_010 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_000264_030--Hb_001799_050 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_000329_370 Hb_000329_370 Hb_011537_050--Hb_000329_370 Hb_001225_040 Hb_001225_040 Hb_011537_050--Hb_001225_040 Hb_001080_230 Hb_001080_230 Hb_011537_050--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190 Hb_000640_310 Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_002255_030 Hb_002255_030 Hb_000023_330--Hb_002255_030 Hb_003680_150 Hb_003680_150 Hb_000023_330--Hb_003680_150 Hb_004954_070 Hb_004954_070 Hb_000023_330--Hb_004954_070 Hb_023386_040 Hb_023386_040 Hb_000023_330--Hb_023386_040 Hb_016898_010 Hb_016898_010 Hb_000023_330--Hb_016898_010 Hb_009486_180 Hb_009486_180 Hb_000023_330--Hb_009486_180 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_002684_040 Hb_002684_040 Hb_183612_040--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_183612_040--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_183612_040--Hb_003878_110 Hb_079526_030 Hb_079526_030 Hb_183612_040--Hb_079526_030 Hb_000077_320 Hb_000077_320 Hb_002374_010--Hb_000077_320 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.72007 5.86098 3.57266 2.09911 3.78246 6.60386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55136 3.55785 1.77816 5.48211 3.37207

CAGE analysis