Hb_001913_040

Information

Type -
Description -
Location Contig1913: 16133-17281
Sequence    

Annotation

kegg
ID rcu:RCOM_0606730
description hypothetical protein
nr
ID XP_002530969.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80630
description Dirigent protein 9 OS=Arabidopsis thaliana GN=DIR9 PE=2 SV=1
trembl
ID B9SYA0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0606730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001913_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005295_020 0.1124816876 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
3 Hb_009252_070 0.129911485 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
4 Hb_001269_660 0.1300955041 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
5 Hb_001538_080 0.1320349617 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_006920_020 0.1365476391 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
7 Hb_001289_070 0.1379922709 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_002925_060 0.1382144006 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
9 Hb_003152_020 0.1390900542 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
10 Hb_007163_110 0.1399954027 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_047612_010 0.1415406507 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
12 Hb_000910_060 0.1431581792 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000236_290 0.1440003499 - - organic anion transporter, putative [Ricinus communis]
14 Hb_002518_230 0.1443823484 - - -
15 Hb_004650_110 0.1455971796 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
16 Hb_012395_060 0.147179924 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
17 Hb_000402_060 0.147228128 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
18 Hb_001408_200 0.1496716053 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
19 Hb_001688_050 0.1501251972 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
20 Hb_000364_090 0.1503761436 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001913_040 Hb_001913_040 Hb_005295_020 Hb_005295_020 Hb_001913_040--Hb_005295_020 Hb_009252_070 Hb_009252_070 Hb_001913_040--Hb_009252_070 Hb_001269_660 Hb_001269_660 Hb_001913_040--Hb_001269_660 Hb_001538_080 Hb_001538_080 Hb_001913_040--Hb_001538_080 Hb_006920_020 Hb_006920_020 Hb_001913_040--Hb_006920_020 Hb_001289_070 Hb_001289_070 Hb_001913_040--Hb_001289_070 Hb_001512_130 Hb_001512_130 Hb_005295_020--Hb_001512_130 Hb_136408_040 Hb_136408_040 Hb_005295_020--Hb_136408_040 Hb_012484_050 Hb_012484_050 Hb_005295_020--Hb_012484_050 Hb_002062_010 Hb_002062_010 Hb_005295_020--Hb_002062_010 Hb_003152_020 Hb_003152_020 Hb_005295_020--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_005295_020--Hb_007163_110 Hb_047612_010 Hb_047612_010 Hb_009252_070--Hb_047612_010 Hb_000368_050 Hb_000368_050 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_138585_010 Hb_138585_010 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_149507_010 Hb_149507_010 Hb_001269_660--Hb_149507_010 Hb_012395_060 Hb_012395_060 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001277_010 Hb_001277_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_000103_130 Hb_000103_130 Hb_001538_080--Hb_000103_130 Hb_001210_060 Hb_001210_060 Hb_001538_080--Hb_001210_060 Hb_097335_010 Hb_097335_010 Hb_001538_080--Hb_097335_010 Hb_027472_060 Hb_027472_060 Hb_001538_080--Hb_027472_060 Hb_005730_060 Hb_005730_060 Hb_001538_080--Hb_005730_060 Hb_000235_040 Hb_000235_040 Hb_001538_080--Hb_000235_040 Hb_006920_020--Hb_001289_070 Hb_000176_050 Hb_000176_050 Hb_006920_020--Hb_000176_050 Hb_002400_300 Hb_002400_300 Hb_006920_020--Hb_002400_300 Hb_000122_230 Hb_000122_230 Hb_006920_020--Hb_000122_230 Hb_002925_060 Hb_002925_060 Hb_006920_020--Hb_002925_060 Hb_001408_200 Hb_001408_200 Hb_006920_020--Hb_001408_200 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_002151_070 Hb_002151_070 Hb_001289_070--Hb_002151_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0374069 0.0466388 0.440206 1.44363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0624029 0.161758 1.31877

CAGE analysis