Hb_001433_020

Information

Type -
Description -
Location Contig1433: 22767-32272
Sequence    

Annotation

kegg
ID tcc:TCM_026680
description Nodulin MtN3 family protein isoform 1
nr
ID XP_012088980.1
description PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
swissprot
ID Q10LN5
description Bidirectional sugar transporter SWEET16 OS=Oryza sativa subsp. japonica GN=SWEET16 PE=3 SV=1
trembl
ID A0A067JHN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23294 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11391: 23651-26549
cDNA
(Sanger)
(ID:Location)		 029_J07.ab1: 23981-26549

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_020 0.0 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
2 Hb_017491_070 0.1200955766 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
3 Hb_000483_180 0.1688373666 - - -
4 Hb_009558_040 0.1719018376 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
5 Hb_002686_330 0.1757414376 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
6 Hb_002896_060 0.1770601371 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
7 Hb_035947_010 0.1783506331 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
8 Hb_007951_100 0.1855907896 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_001083_030 0.1920395418 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
10 Hb_000920_250 0.1924077083 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
11 Hb_000580_130 0.1925541215 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
12 Hb_000735_100 0.1932062005 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
13 Hb_013394_060 0.1964169634 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
14 Hb_001051_090 0.1967248495 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
15 Hb_002965_030 0.1976234756 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
16 Hb_003026_030 0.1987571789 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
17 Hb_001117_190 0.1996064875 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
18 Hb_002947_040 0.2017103427 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
19 Hb_011609_050 0.2019259016 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
20 Hb_001534_070 0.205816408 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001433_020 Hb_001433_020 Hb_017491_070 Hb_017491_070 Hb_001433_020--Hb_017491_070 Hb_000483_180 Hb_000483_180 Hb_001433_020--Hb_000483_180 Hb_009558_040 Hb_009558_040 Hb_001433_020--Hb_009558_040 Hb_002686_330 Hb_002686_330 Hb_001433_020--Hb_002686_330 Hb_002896_060 Hb_002896_060 Hb_001433_020--Hb_002896_060 Hb_035947_010 Hb_035947_010 Hb_001433_020--Hb_035947_010 Hb_001301_130 Hb_001301_130 Hb_017491_070--Hb_001301_130 Hb_000735_100 Hb_000735_100 Hb_017491_070--Hb_000735_100 Hb_017491_070--Hb_002896_060 Hb_006618_040 Hb_006618_040 Hb_017491_070--Hb_006618_040 Hb_000997_150 Hb_000997_150 Hb_017491_070--Hb_000997_150 Hb_119886_040 Hb_119886_040 Hb_000483_180--Hb_119886_040 Hb_000483_180--Hb_009558_040 Hb_000488_010 Hb_000488_010 Hb_000483_180--Hb_000488_010 Hb_002311_230 Hb_002311_230 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_011512_060 Hb_011512_060 Hb_009558_040--Hb_011512_060 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_007885_070 Hb_007885_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_002708_020 Hb_002708_020 Hb_002686_330--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_002686_330--Hb_027402_090 Hb_002686_330--Hb_000024_070 Hb_008246_030 Hb_008246_030 Hb_002686_330--Hb_008246_030 Hb_000170_060 Hb_000170_060 Hb_002686_330--Hb_000170_060 Hb_149838_010 Hb_149838_010 Hb_002686_330--Hb_149838_010 Hb_001051_090 Hb_001051_090 Hb_002896_060--Hb_001051_090 Hb_027380_030 Hb_027380_030 Hb_002896_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002896_060--Hb_002092_100 Hb_000453_140 Hb_000453_140 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002805_060 Hb_002805_060 Hb_002896_060--Hb_002805_060 Hb_003327_030 Hb_003327_030 Hb_035947_010--Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_035947_010--Hb_097433_010 Hb_003751_060 Hb_003751_060 Hb_035947_010--Hb_003751_060 Hb_002918_310 Hb_002918_310 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_002387_020 Hb_002387_020 Hb_035947_010--Hb_002387_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0665 4.57241 4.84734 0.482634 10.4157 3.92785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17603 0.959 1.72506 0.769412 1.99394

CAGE analysis