Hb_001189_170

Information

Type transcription factor
Description TF Family: B3
Location Contig1189: 134584-136266
Sequence    

Annotation

kegg
ID rcu:RCOM_1340820
description hypothetical protein
nr
ID XP_002515100.1
description hypothetical protein RCOM_1340820 [Ricinus communis]
swissprot
ID Q8LMR9
description B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1
trembl
ID B9RMW1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1340820 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor nga1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05606: 134237-136287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_170 0.0 transcription factor TF Family: B3 hypothetical protein RCOM_1340820 [Ricinus communis]
2 Hb_020437_020 0.2355664417 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
3 Hb_008803_040 0.2524010145 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
4 Hb_001437_280 0.2624692785 - - AMP dependent CoA ligase, putative [Ricinus communis]
5 Hb_139848_010 0.2696726616 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
6 Hb_000110_200 0.2731756578 - - unnamed protein product [Vitis vinifera]
7 Hb_005167_020 0.2736833539 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
8 Hb_001863_020 0.2772007569 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
9 Hb_005227_040 0.2809751044 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
10 Hb_008760_010 0.2816823963 - - berberine bridge enzyme [Hevea brasiliensis]
11 Hb_001085_150 0.2820985568 - - Purple acid phosphatase 15 [Theobroma cacao]
12 Hb_011609_090 0.2856048956 - - protein with unknown function [Ricinus communis]
13 Hb_000077_060 0.2866331654 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
14 Hb_042202_060 0.2927411396 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
15 Hb_002157_030 0.2930797557 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000123_240 0.2936903285 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_000424_040 0.2937359034 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
18 Hb_000705_250 0.2963374023 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
19 Hb_001433_130 0.2976674972 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
20 Hb_006268_020 0.3002979412 - - hypothetical protein JCGZ_10516 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_170 Hb_001189_170 Hb_020437_020 Hb_020437_020 Hb_001189_170--Hb_020437_020 Hb_008803_040 Hb_008803_040 Hb_001189_170--Hb_008803_040 Hb_001437_280 Hb_001437_280 Hb_001189_170--Hb_001437_280 Hb_139848_010 Hb_139848_010 Hb_001189_170--Hb_139848_010 Hb_000110_200 Hb_000110_200 Hb_001189_170--Hb_000110_200 Hb_005167_020 Hb_005167_020 Hb_001189_170--Hb_005167_020 Hb_005470_030 Hb_005470_030 Hb_020437_020--Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_020437_020--Hb_002284_220 Hb_020437_020--Hb_005167_020 Hb_020437_020--Hb_139848_010 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_020437_020--Hb_001437_280 Hb_000705_250 Hb_000705_250 Hb_008803_040--Hb_000705_250 Hb_003186_040 Hb_003186_040 Hb_008803_040--Hb_003186_040 Hb_026698_030 Hb_026698_030 Hb_008803_040--Hb_026698_030 Hb_000404_040 Hb_000404_040 Hb_008803_040--Hb_000404_040 Hb_000022_140 Hb_000022_140 Hb_008803_040--Hb_000022_140 Hb_173808_010 Hb_173808_010 Hb_008803_040--Hb_173808_010 Hb_007621_010 Hb_007621_010 Hb_001437_280--Hb_007621_010 Hb_000820_140 Hb_000820_140 Hb_001437_280--Hb_000820_140 Hb_000718_040 Hb_000718_040 Hb_001437_280--Hb_000718_040 Hb_003055_110 Hb_003055_110 Hb_001437_280--Hb_003055_110 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060 Hb_000890_080 Hb_000890_080 Hb_139848_010--Hb_000890_080 Hb_002232_160 Hb_002232_160 Hb_139848_010--Hb_002232_160 Hb_004586_160 Hb_004586_160 Hb_139848_010--Hb_004586_160 Hb_007416_110 Hb_007416_110 Hb_139848_010--Hb_007416_110 Hb_003207_010 Hb_003207_010 Hb_139848_010--Hb_003207_010 Hb_000110_200--Hb_000718_040 Hb_000670_100 Hb_000670_100 Hb_000110_200--Hb_000670_100 Hb_000307_070 Hb_000307_070 Hb_000110_200--Hb_000307_070 Hb_046823_010 Hb_046823_010 Hb_000110_200--Hb_046823_010 Hb_000110_200--Hb_001437_280 Hb_000070_110 Hb_000070_110 Hb_000110_200--Hb_000070_110 Hb_010422_070 Hb_010422_070 Hb_005167_020--Hb_010422_070 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_004128_070 Hb_004128_070 Hb_005167_020--Hb_004128_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155533 4.54716 10.4902 2.27383 0 0.0176677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30685 2.27588 19.4459 7.46806 14.5637

CAGE analysis